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@physical-biology-of-chromatin

Physical Biology of Chromatin

Popular repositories

  1. Painter-Model Painter-Model Public

    Python script to simulate chromatin state dynamics and transcription

    Python 2 1

  2. LatticePoly LatticePoly Public

    MC simulations of lattice polymers

    C++ 1

  3. 3DPolyS-Epi 3DPolyS-Epi Public

    Fortran code for simulating block copolymer dynamics

  4. Homologous_pairing Homologous_pairing Public

    Fortran code for simulating pairing dynamics

  5. BackRNAP-Condensin BackRNAP-Condensin Public

    Matlab script to simulate the interplay between condensin and RNAP 1D translocation

    MATLAB

  6. PcG-mESC PcG-mESC Public

    Jupyter notebook to simulate the stochastic dynamics of H3K27 modifications around PcG-target, active or bivalent genes in WT mESC condition.

    Jupyter Notebook

Repositories

Showing 9 of 9 repositories
  • LatticePoly Public

    MC simulations of lattice polymers

    C++ 0 1 0 1 Updated Apr 22, 2024
  • Painter-Model Public

    Python script to simulate chromatin state dynamics and transcription

    Python 2 1 0 0 Updated Oct 4, 2023
  • Transcription Public
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Aug 8, 2023
  • PcG-mESC Public

    Jupyter notebook to simulate the stochastic dynamics of H3K27 modifications around PcG-target, active or bivalent genes in WT mESC condition.

    Jupyter Notebook 0 0 0 0 Updated Aug 7, 2023
  • LiquidGel_ChromSimu Public

    Fortran codes to simulate the polymer models used in Hossein et al, bioRxiv, 2021: data-driven mouse and Drosophila models and uniform loop extrusion models

    0 0 0 0 Updated Aug 7, 2023
  • PseuDam Public
    Nextflow 0 0 0 0 Updated Jun 10, 2022
  • 3DPolyS-Epi Public

    Fortran code for simulating block copolymer dynamics

    0 0 0 0 Updated Mar 18, 2021
  • BackRNAP-Condensin Public

    Matlab script to simulate the interplay between condensin and RNAP 1D translocation

    MATLAB 0 0 0 0 Updated Feb 19, 2021
  • Homologous_pairing Public

    Fortran code for simulating pairing dynamics

    0 0 0 0 Updated Oct 6, 2020

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