Publications

This folder holds the following references to publications, sorted by year and author.

There are 42 references in this bibliography folder.

Hayden, L, Lochovska, K, Semon, M, Renaud, S, Delignette-Muller, M, Vilcot, M, Peterkova, R, Hovorakova, M, and Pantalacci, S (2020).
Developmental variability channels mouse molar evolution.
Elife, 9.

Rey, C, Lanore, V, Veber, P, Gueguen, L, Lartillot, N, Semon, M, and Boussau, B (2019).
Detecting adaptive convergent amino acid evolution.
Philos Trans R Soc Lond B Biol Sci, 374(1777):20180234.

Sadier, A, Twarogowska, M, Steklíková, k, Hayden, L, Lambert, A, Schneider, P, Laudet, V, Hovorakova, M, Calvez, V, and Pantalacci, S (2019).
Modeling Edar expression reveals the hidden dynamics of tooth signaling center patterning
PLOS Biology, 17:e3000064.

Salis, P, Lorin, T, Lewis, V, Rey, C, Marcionetti, A, Escande, M, Roux, N, Besseau, L, Salamin, N, Semon, M, Parichy, D, Volff, J, and Laudet, V (2019).
Developmental and comparative transcriptomic identification of iridophore contribution to white barring in clownfish.
Pigment Cell Melanoma Res.

Rey, C, Gueguen, L, Semon, M, and Boussau, B (2018).
Accurate detection of convergent amino-acid evolution with PCOC.
Mol Biol Evol.

Rey, C, Veber, P, Boussau, B, and Semon, M (2018).
CAARS: comparative assembly and annotation of RNA-Seq data.
Bioinformatics.

Valfort, A, Launay, C, Semon, M, and Delattre, M (2018).
Evolution of mitotic spindle behavior during the first asymmetric embryonic division of nematodes.
PLoS Biol, 16(1):e2005099.

Vial, J, Royet, A, Cassier, P, Tortereau, A, Dinvaut, S, Maillet, D, Gratadou-Hupon, L, Creveaux, M, Sadier, A, Tondeur, G, Leon, S, Depaepe, L, Pantalacci, S, de la Fouchardiere, A, Micheau, O, Dalle, S, Laudet, V, Mehlen, P, and Castets, M (2018).
The Ectodysplasin receptor EDAR acts as a tumor suppressor in melanoma by conditionally inducing cell death.
Cell Death Differ.

Pallares, LF, Ledevin, R, Pantalacci, S, Turner, LM, Steingrimsson, E, and Renaud, S (2017).
Genomic regions controlling shape variation in the first upper molar of the house mouse.
Elife, 6.

Pantalacci, S, Gueguen, L, Petit, C, Lambert, A, Peterkova, R, and Semon, M (2017).
Transcriptomic signatures shaped by cell proportions shed light on comparative developmental biology.
Genome Biol, 18(1):29.

Pouyet, F, Mouchiroud, D, Duret, L, and Semon, M (2017).
Recombination, meiotic expression and human codon usage.
Elife, 6.

Renvoise, E, Kavanagh, KD, Lazzari, V, Hakkinen, TJ, Rice, R, Pantalacci, S, Salazar-Ciudad, I, and Jernvall, J (2017).
Mechanical constraint from growing jaw facilitates mammalian dental diversity.
Proc Natl Acad Sci U S A, 114(35):9403-9408.

Kao, D, Lai, AG, Stamataki, E, Rosic, S, Konstantinides, N, Jarvis, E, Di Donfrancesco, A, Pouchkina-Stancheva, N, Semon, M, Grillo, M, Bruce, H, Kumar, S, Siwanowicz, I, Le, A, Lemire, A, Eisen, MB, Extavour, C, Browne, WE, Wolff, C, Averof, M, Patel, NH, Sarkies, P, Pavlopoulos, A, and Aboobaker, A (2016).
The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.
Elife, 5.

Urdy, S, Goudemand, N, and Pantalacci, S (2016).
Looking Beyond the Genes: The Interplay Between Signaling Pathways and Mechanics in the Shaping and Diversification of Epithelial Tissues.
Curr Top Dev Biol, 119:227-90.

Chatagnon, A, Veber, P, Morin, V, Bedo, J, Triqueneaux, G, Semon, M, Laudet, V, d'Alche-Buc, F, and Benoit, G (2015).
RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements.
Nucleic Acids Res, 43(10):4833-54.

Pantalacci, S and Semon, M (2015).
Transcriptomics of developing embryos and organs: A raising tool for evo-devo.
J Exp Zool B Mol Dev Evol, 324(4):363-71.

Sadier, A, Lambert, E, Chevret, P, Decimo, D, Semon, M, Tohme, M, Ruggiero, F, Ohlmann, T, Pantalacci, S, and Laudet, V (2015).
Tinkering signaling pathways by gain and loss of protein isoforms: the case of the EDA pathway regulator EDARADD.
BMC Evol Biol, 15:129.

Sadier, A, Viriot, L, Pantalacci, S, and Laudet, V (2014).
The ectodysplasin pathway: from diseases to adaptations.
Trends Genet, 30(1):24-31.

Semon, M, Schubert, M, and Laudet, V (2012).
Programmed genome rearrangements: in lampreys, all cells are not equal.
Curr Biol, 22(16):R641-3.

Campo-Paysaa, F, Semon, M, Cameron, RA, Peterson, KJ, and Schubert, M (2011).
microRNA complements in deuterostomes: origin and evolution of microRNAs.
Evol Dev, 13(1):15-27.

Renaud, S, Pantalacci, S, and Auffray, J (2011).
Differential evolvability along lines of least resistance of upper and lower molars in island house mice.
PLoS One, 6(5):e18951.

Koop, D, Holland, ND, Semon, M, Alvarez, S, de Lera, AR, Laudet, V, Holland, LZ, and Schubert, M (2010).
Retinoic acid signaling targets Hox genes during the amphioxus gastrula stage: insights into early anterior-posterior patterning of the chordate body plan.
Dev Biol, 338(1):98-106.

Magee, AM, Aspinall, S, Rice, DW, Cusack, BP, Semon, M, Perry, AS, Stefanovic, S, Milbourne, D, Barth, S, Palmer, JD, Gray, JC, Kavanagh, TA, and Wolfe, KH (2010).
Localized hypermutation and associated gene losses in legume chloroplast genomes.
Genome Res, 20(12):1700-10.

Pasco-Viel, E, Charles, C, Chevret, P, Semon, M, Tafforeau, P, Viriot, L, and Laudet, V (2010).
Evolutionary trends of the pharyngeal dentition in Cypriniformes (Actinopterygii: Ostariophysi).
PLoS One, 5(6):e11293.

Prochazka, J, Pantalacci, S, Churava, S, Rothova, M, Lambert, A, Lesot, H, Klein, O, Peterka, M, Laudet, V, and Peterkova, R (2010).
Patterning by heritage in mouse molar row development.
Proc Natl Acad Sci U S A, 107(35):15497-502.