1996-present

This folder holds the following references to publications, sorted by year and author.

There are 30 references in this bibliography folder.

Cluet, D, Amri, I, Vergier, B, Léault, J, Audibert, A, Grosjean, C, Calabrési, D, and Spichty, M (2020).
A quantitative tri-fluorescent yeast two-hybrid system: from flow cytometry to in-cellula affinities
Molecular & Cellular Proteomics.

Beurton, F, Stempor, P, Caron, M, Appert, A, Dong, Y, Chen, RA, Cluet, D, Couté, Y, Herbette, M, Huang, N, Polveche, H, Spichty, M, Bedet, C, Ahringer, J, and Palladino, F (2019).
Physical and functional interaction between SET1/COMPASS complex component CFP-1 and a Sin3S HDAC complex in C. elegans
Nucleic Acids Research.

Rossi, M, Spichty, M, Attorri, L, Distante, C, Nervi, C, Salvati, S, and Vitelli, L (2017).
Eicosapentaenoic acid modulates the synergistic action of CREB1 and ID/E2A family members in the rat pup brain and mouse embryonic stem cells.
Biochim Biophys Acta, 1860(8):870-884.

Fast, DE, Zalibera, M, Lauer, A, Eibel, A, Schweigert, C, Kelterer, A, Spichty, M, Neshchadin, D, Voll, D, Ernst, H, Liang, Y, Dietliker, K, Unterreiner, A, Barner-Kowollik, C, Grutzmacher, H, and Gescheidt, G (2016).
Bis(mesitoyl)phosphinic acid: photo-triggered release of metaphosphorous acid in solution.
Chem Commun (Camb), 52(64):9917-20.

Cluet, D, Stebe, P, Riche, S, Spichty, M, and Delattre, M (2014).
Automated high-throughput quantification of mitotic spindle positioning from DIC movies of Caenorhabditis embryos.
PLoS One, 9(4):e93718.

Zalibera, M, Stébé, P, Dietliker, K, Grützmacher, H, Spichty, M, and Gescheidt, G (2014).
The Redox Chemistry of Mono-and Bis (acyl) phosphane Oxides
European Journal of Organic Chemistry, 2014(2):331–337.

Dibenedetto, S, Cluet, D, Stebe, P, Baumle, V, Leault, J, Terreux, R, Bickle, M, Chassey, BDE, Mikaelian, I, Colas, P, Spichty, M, Zoli, M, and Rudkin, BB (2013).
Calcineurin A versus NS5A-TP2/HD domain containing 2: a case study of site-directed low-frequency random mutagenesis for dissecting target specificity of peptide aptamers.
Mol Cell Proteomics, 12(7):1939-52.

Rao, F and Spichty, M (2012).
Thermodynamics and kinetics of large-time-step molecular dynamics.
J Comput Chem, 33(5):475-83.

Meguellati, K, Ladame, S, and Spichty, M (2011).
A conceptually improved TD-DFT approach for predicting the maximum absorption wavelength of cyanine dyes
Dyes and Pigments, 90(2):114–118.

Meguellati, K, Spichty, M, and Ladame, S (2010).
Synthesis, spectroscopic and DNA alkylating properties of malondialdehyde (MDA) bis-imine fluorescent adducts.
Mol Biosyst, 6(9):1694-9.

Spichty, M, Cecchini, M, and Karplus, M (2010).
Conformational free-energy difference of a miniprotein from nonequilibrium simulations
The Journal of Physical Chemistry Letters, 1(13):1922–1926.

Cecchini, M, Krivov, SV, Spichty, M, and Karplus, M (2009).
Calculation of free-energy differences by confinement simulations. Application to peptide conformers.
J Phys Chem B, 113(29):9728-40.

Meguellati, K, Spichty, M, and Ladame, S (2009).
Reversible synthesis and characterization of dynamic imino analogues of trimethine and pentamethine cyanine dyes.
Org Lett, 11(5):1123-6.

Spichty, M, Taly, A, Hagn, F, Kessler, H, Barluenga, S, Winssinger, N, and Karplus, M (2009).
The HSP90 binding mode of a radicicol-like E-oxime determined by docking, binding free energy estimations, and NMR 15N chemical shifts.
Biophys Chem, 143(3):111-23.

Maragakis, P, Spichty, M, and Karplus, M (2008).
A differential fluctuation theorem.
J Phys Chem B, 112(19):6168-74.

Spichty, M, Kulicke, KJ, Neuburger, M, Schaffner, S, and Mueller, JF (2008).
Heterobimetallic Bisphosphonate Titanium Complexes: Carbene-Like Carbanions?
European journal of inorganic chemistry, 2008(32):5024–5028.

Maragakis, P, Spichty, M, and Karplus, M (2006).
Optimal estimates of free energies from multistate nonequilibrium work data.
Phys Rev Lett, 96(10):100602.

Seeliger, MA, Spichty, M, Kelly, SE, Bycroft, M, Freund, SMV, Karplus, M, and Itzhaki, LS (2005).
Role of conformational heterogeneity in domain swapping and adapter function of the Cks proteins.
J Biol Chem, 280(34):30448-59.

Giese, B, Spichty, M, and Wessely, S (2001).
Long-distance charge transport through DNA. An extended hopping model
Pure and Applied Chemistry, 73(3):449–453.

Muller, JFK, Kulicke, KJ, Neuburger, M, and Spichty, M (2001).
Carbanions Substituted by Transition Metals: Synthesis, Structure, and Configurational Restrictions of a Lithium Titanium Phosphonate.
Angew Chem Int Ed Engl, 40(15):2890-2893.

Spichty, M, Giese, B, Matsumoto, A, Fischer, H, and Gescheidt, G (2001).
Conformational dynamics in a methacrylate-derived radical: A computational and EPR study
Macromolecules, 34(4):723–726.

Spichty, M, Turro, NJ, Rist, G, Birbaum, J, Dietliker, K, Wolf, J, and Gescheidt, G (2001).
Bond cleavage in the excited state of acyl phosphene oxides: Insight on the role of conformation by model calculations: A concept
Journal of Photochemistry and Photobiology A: Chemistry, 142(2):209–213.

Giese, B and Spichty, M (2000).
Long distance charge transport through DNA: quantification and extension of the hopping model.
Chemphyschem, 1(4):195-8.

Glatthar, R, Spichty, M, Gugger, A, Batra, R, Damm, W, Mohr, M, Zipse, H, and Giese, B (2000).
Mechanistic studies in the radical induced DNA strand cleavage—Formation and reactivity of the radical cation intermediate
Tetrahedron, 56(25):4117–4128.

Spichty, M, Fragale, G, and Wirth, T (2000).
Theoretical investigations on the stereoselective selenenylation reaction of alkenes
Journal of the American Chemical Society, 122(44):10914–10916.