Next: NMmpa - Examples, Up: Programs
This program formats the output of the mapping of the tilling array probes onto the genome sequences.
Short | Long | Description
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–rotate | Rotate the x,y coordinates of the array
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-i | –input | The input file corresponding to the Mummer output
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-o | –output | The output directory
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-a | –array-size | The number of probe slots on the array (row/column)
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-c | –chrom-file | A file which lists the chromosome sequence ids to focus on
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