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1.1 Programs available in Nucleo-Miner Package

The Nucleo-Miner package has been designed to integrate a large variety of information required to finely map and characterize nucleosome occupancy and modifications at a genome-wide scale. To do so, Nucleo-Miner package contains a series of programs in order to efficiently store the data, to perform the analyses and to import/export data/results in various formats. Follows a list of the different command line programs included in the Nucleo-Miner package.

The use of these programs is described in this manual. Each chapter provides detailed definitions of the programs, followed by example.