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2.31 NManowin - Program Arguments

This program

Short Long Description
–sliding Use a sliding window instead of contiguous bins
-i –input The input directory
-c –config The input configuration file
-o –output The output file
-s –seqid The name of the chromosome to focus on
-f –feature A GFF (version 3) file providing the genomic annotations
-w –window The window (bp) around SNEP to look at
-p –pv-cutoff The p-value cut-off for calling SNEP
-l –feature-id A file listing the features to consider