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This program extract probe intensities from a batch of arrays and merge it into a single tabulated file. The program can also perform normalization of the arrays
Short | Long | Description
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–no-rotate | No rotation of the x,y coordinates of the array
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–CbyC | Export data chromosome by chromosome in the -o directory
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-c | –cel | A file listing the name of the CEL files (in text format) to consider
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-d | –cel-dir | The path to the directory containing the CEL files
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-o | –output | The output file or directory
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-p | –prb | The file which gives the genomic and x,y coordinates of the probes
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-n | –qqnorm | Quantile-Quantile normalization. 'qq' = qqnorm, 'lqq' = log2 transformation followed by qqnorm, 'qql' = qqnorm followed by log2 transformation
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