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This program carries out an ANOVA nucleosome by nucleosome and report the p-values of the interaction term. NMalign2 must have been run before. It is much more faster than NManova.
Short | Long | Description
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-i | –input | The input directory containing alignment files
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-a | –align | The alignment directory (as generated by NMalign2)
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-o | –output | The output directory
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-p | –prb-min | The minimum number of probes within a nucleosome
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