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The program selects only the probes that share the same genomic and array coordinates between a reference and a query genome.
Short | Long | Description
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-r | –ref | The reference probes
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-q | –qry | The query probes
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-o | –output | The output file
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-c | –ref2qry | The reference-query genomic alignment
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-w | –window | The window around the reference probe position for accepting a query match
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