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2.1 NMmpa - Program Arguments

This program formats the output of the mapping of the tilling array probes onto the genome sequences.

Short Long Description
–rotate Rotate the x,y coordinates of the array
-i –input The input file corresponding to the Mummer output
-o –output The output directory
-a –array-size The number of probe slots on the array (row/column)
-c –chrom-file A file which lists the chromosome sequence ids to focus on