Next: , Previous: NMmpa - Examples, Up: Programs


2.3 NMcl2tab - Program Arguments

This program extract probe intensities from a batch of arrays and merge it into a single tabulated file. The program can also perform normalization of the arrays

Short Long Description
–no-rotate No rotation of the x,y coordinates of the array
–CbyC Export data chromosome by chromosome in the -o directory
-c –cel A file listing the name of the CEL files (in text format) to consider
-d –cel-dir The path to the directory containing the CEL files
-o –output The output file or directory
-p –prb The file which gives the genomic and x,y coordinates of the probes
-n –qqnorm Quantile-Quantile normalization. 'qq' = qqnorm, 'lqq' = log2 transformation followed by qqnorm, 'qql' = qqnorm followed by log2 transformation