Useful Resources - Computing

Useful documentations, tutorials etc... for computing

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    Web Link CAP3 sequence assembler

    An assembler from the Pole Rhone-Alpin de Bio Informatique in Lyon. We found CAP3 very useful when re-sequencing plasmids or genomic regions by Sanger sequencing.

    CAP3 is NOT designed for NGS data assembly.

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    Web Link R Book

    A free book on R (in French)

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    Web Link Git tutorial

    A book and tutorial explaining what is Git and how to use it

    (Git is a version-tracking system for sets of files, such as computer codes)

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    Web Link PSMN cluster documentation

    Documentation on how to use the PSMN computer cluster of ENS de Lyon.

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    Web Link IN2P3 cluster documentation

    Documentation regarding how to use the IN2P3 cluster

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    Web Link MySQL documentation

    Reference manual for MySQL

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    Web Link Eupean Data Repository (EBI)

    A highly-maintained and high-quality repository of biological data (sequencing, imaging and beyond). Ideal to make a repository accession number linked to a publication.

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    Web Link Protein back translation

    A useful webapp from EMBOSS to translate protein sequences back to DNA using species-optimized codon usage.