====== BRAKER ======

  * Unsupervised RNA-Seq-based genome annotation

^  Version  ^  Compilateur  ^  Interconnexion  ^  chemin d'accès  ^  OS  ^
|  2.0.3  |  N/A  |  N/A  |  ''/applis/PSMN/generic/BRAKER/2.0.3/bin''  |  Generic  |
| | **modulefile** : BRAKER/2.0.3  ||||





Pour utiliser les modules, consulter [[documentation:tools:modules|Environment Modules]]


==== Usage on PSMN ====

Braker needs additionals PERL modules installable from CPAN (see [[documentation:tools:langages:perl5|Perl5]] for CPAN installation/configuration ):

<code perl>
cpan
> install File::Spec::Functions
> install Hash::Merge
> install List::Util
> install Logger::Simple
> install Module::Load::Conditional
> install Sub::Uplevel
> install Parallel::ForkManager
> install Scalar::Util::Numeric
#> install YAML (core module)
#> install POSIX (core module)
</code>

See also [[documentation:tools:software:augustus|Augustus]] for additional configuration of ''--AUGUSTUS_CONFIG_PATH'' variable.


==== General usage ====

[[documentation:tools:software:augustus|AUGUSTUS]] and [[documentation:tools:software:genemark|GeneMark-ET]]  are required for BRAKER.



===== Site officiel =====

  * http://exon.gatech.edu/braker1.html
  * http://bioinf.uni-greifswald.de/bioinf/braker/index.html