====== Trimmomatic ======

  *  a multithreaded command line tool that can be used to trim and crop Illumina (fastaq) data as well as to remove adapters. 

^  Version  ^  Compilateur  ^  Interconnexion  ^  chemin d'accès  ^  OS  ^
|  0.36  |  N/A  |  N/A  |  /usr/share/java/trimmomatic.jar |  Debian9  |
| | **modulefile** : aucun  ||||

<code bash>
# usage type
TRIMMOMATIC=/usr/share/java/trimmomatic.jar
java -jar $TRIMMOMATIC PE/SE -options -de -trimm -o -matic
</code>

<code bash>
## Example
## Quick start
# Paired End
java -jar <path to trimmomatic.jar> PE [-threads <threads] [-phred33 | -phred64] [-trimlog <logFile>] <input 1> <input 2> <paired output 1> <unpaired output 1> <paired output 2> <unpaired output 2> <step 1> 
</code>






===== Site officiel =====

  * http://www.usadellab.org/cms/index.php?page=trimmomatic