breseq

• a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

Pour utiliser les modulefiles, consulter Environment Modules

APPLIS=/applis/PSMN/debian9/software

• http://barricklab.org/twiki/pub/Lab/ToolsBacterialGenomeResequencing/documentation/index.html

Dépendances sur Bowtie2/2.3.3 et R/3.4.3 inclusent dans le modulefile.

• http://barricklab.org/twiki/bin/view/Lab/ToolsBacterialGenomeResequencing
• https://github.com/barricklab/breseq