Canu

• a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION).

Pour utiliser les modulefiles, consulter Environment Modules

• canu.defaults “system-wide”

maxMemory = 250
maxThreads = 16
useGrid = remote
gridEngine = sge
gridEngineArrayMaxJobs = 7500
gridEngineThreadsOption = -pe openmp16 THREADS
gridEngineMemoryOption = -l h_vmem=MEMORY

Canu est un fork de Celera WGS.

• https://github.com/marbl/canu
• http://canu.readthedocs.io/en/stable/index.html