Trimmomatic

  • a multithreaded command line tool that can be used to trim and crop Illumina (fastaq) data as well as to remove adapters.
Version Compilateur Interconnexion chemin d'accès OS
0.36 N/A N/A /usr/share/java/trimmomatic.jar Debian9
modulefile : aucun
# usage type
TRIMMOMATIC=/usr/share/java/trimmomatic.jar
java -jar $TRIMMOMATIC PE/SE -options -de -trimm -o -matic
## Example
## Quick start
# Paired End
java -jar <path to trimmomatic.jar> PE [-threads <threads] [-phred33 | -phred64] [-trimlog <logFile>] <input 1> <input 2> <paired output 1> <unpaired output 1> <paired output 2> <unpaired output 2> <step 1> 

Site officiel

documentation/tools/software/trimmomatic.txt · Dernière modification: 2020/08/25 17:58 (modification externe)