Ci-dessous, les différences entre deux révisions de la page.
Prochaine révision | Révision précédente | ||
documentation:tools:software:trimmomatic [2016/03/22 10:10] – créée ltaulell | documentation:tools:software:trimmomatic [2020/08/25 15:58] (Version actuelle) – modification externe 127.0.0.1 | ||
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====== Trimmomatic ====== | ====== Trimmomatic ====== | ||
+ | |||
+ | * a multithreaded command line tool that can be used to trim and crop Illumina (fastaq) data as well as to remove adapters. | ||
^ Version | ^ Version | ||
- | | 0.36 | N/A | N/A | /applis/PSMN/generic/Trimmomatic/ | + | | 0.36 | N/A | N/A | /usr/share/java/trimmomatic.jar | |
- | | | **modulefile** : Trimmomatic/ | + | | | **modulefile** : aucun |||| |
+ | |||
+ | <code bash> | ||
+ | # usage type | ||
+ | TRIMMOMATIC=/ | ||
+ | java -jar $TRIMMOMATIC PE/SE -options -de -trimm -o -matic | ||
+ | </ | ||
+ | |||
+ | <code bash> | ||
+ | ## Example | ||
+ | ## Quick start | ||
+ | # Paired End | ||
+ | java -jar <path to trimmomatic.jar> | ||
+ | </ | ||
+ | |||
+ | |||
+ | |||
- | {{INLINETOC}} | ||
===== Site officiel ===== | ===== Site officiel ===== | ||
* http:// | * http:// | ||
+ |