Tools and Databases

mardi 18 novembre 2014
par  RDP
popularité : 4%

The lab is involved in the development of analysis tools and databases. Here you can find some examples of them.


Rosa sp. Transcriptome Database

PNG - 6.6 ko The database provides useful information on Rosa sp. expressed genes, with thorough annotation and an overview of expression patterns for transcripts with good accuracy, and represents a valuable prerequisite to the sequencing of the rose genome.


The Petunia Platform

JPEG - 2.9 ko The Petunia Platform promotes the main object of research of its participating members, Petunia, and in a broader sense research on Solanaceous species. The tools that you can find on the platform will greatly facilitate the use of Petunia as a plant model in genetics and molecular biology.


MARS-ALT on Openalea

PNG - 5 ko MARS-ALT is a pipeline designed to track cell lineages at different time steps. It provides algorithms for three-dimensional reconstruction and cell segmentation, as well as for automated lineage tracking. This gives the basis of 4D analysis of plant organ development at cellular level.


FibrilTool on MorphoGraphX

PNG - 5.9 ko MorphoGraphX is an open source application for the visualization and analysis of 4D biological datasets. Developed by researchers, it is primarily used for the analysis and quantification of 4D live-imaged confocal data. FibrilTool in particular computes the mean fibril orientation on 3D curved surfaces.



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