Trimmomatic
- a multithreaded command line tool that can be used to trim and crop Illumina (fastaq) data as well as to remove adapters.
| Version | Compilateur | Interconnexion | chemin d'accès | OS |
|---|---|---|---|---|
| 0.36 | N/A | N/A | /usr/share/java/trimmomatic.jar | Debian9 |
| modulefile : aucun | ||||
# usage type TRIMMOMATIC=/usr/share/java/trimmomatic.jar java -jar $TRIMMOMATIC PE/SE -options -de -trimm -o -matic
## Example ## Quick start # Paired End java -jar <path to trimmomatic.jar> PE [-threads <threads] [-phred33 | -phred64] [-trimlog <logFile>] <input 1> <input 2> <paired output 1> <unpaired output 1> <paired output 2> <unpaired output 2> <step 1>