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Learn to use Nextflow a pipeline manager

The sources for this partical can be found here

Course material

Creative Commons License

This works are licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.


You will learn to:

  • build your own pipeline from the scripts available on the gitlab
  • test your pipeline on your computer
  • run the same pipeline on the PSMN


For this TP you will need:

  • an account at the PSMN (I will be your person in charge of the account opening)
  • if you choose to work on your own laptop :
  •  a terminal client with ssh
  •  a working docker installation
  • java >= 1.8