pour csh/tcsh
source /usr/share/modules/init/tcsh
module use /applis/PSMN/Modules
module load Base/psmn
You can add in your ~/.cshrc
, the following lines :
source /usr/share/modules/init/tcsh
module use /applis/PSMN/Modules
module load Base/psmn
for bash
source /usr/share/modules/init/bash
module use /applis/PSMN/Modules
module load Base/psmn
You can add in your ~/.profile
, the following lines :
source /usr/share/modules/init/bash
module use /applis/PSMN/Modules
module load Base/psmn
for all shells
module avail
module whatis <software>/<version>
module whatis openmpi/1.6.4-gnu-4.7.2
openmpi/1.6.4-gnu-4.7.2: loads openmpi 1.6.4 (gnu-4.7.2/Debian7) environment
module help <software>/<version>
module help Base/psmn
----------- Module Specific Help for 'Base/psmn' ------------------
loads the modules software & base application environment for PSMN
This adds specifics to several of the environment variables.
automatically load Base/debian7 and Base/sge modulefiles
Compatible with Modules version 3.2.9
module load <software>/<version>
module list
module unload <software>/<version>
module unuse /applis/PSMN/Modules
Certains modules chargent automatiquement leurs dépendances, ce qui peut engendrer des conflits.
Usage dans les scripts (non-interactif)
Certains modules chargent automatiquement leurs dépendances, ce qui peut engendrer des conflits.
pour csh/tcsh
source /usr/share/modules/init/tcsh
module use /applis/PSMN/Modules
module load Base/psmn
Ajoutez ensuite les modules dont vous avez besoin (voir module avail
).
pour bash
source /usr/share/modules/init/bash
module use /applis/PSMN/Modules
module load Base/psmn
Ajoutez ensuite les modules dont vous avez besoin (voir module avail
).
Certains modules chargent automatiquement leurs dépendances, ce qui peut engendrer des conflits.
Modules disponibles (avril 2016)
Cette liste n'est pas à jour, utilisez la commande module avail
pour avoir la liste en cours.
~$ module avail
----------------------------------------------- /applis/PSMN/Modules -----------
ADF/2010.02 Molden/5.0.6
ADF/2012.01 Molden/5.4
ADF/2013.01 Molpro/2010.1-intel-14.0.1
ADF/2013.01.platformmpi Molpro/2010.1-intel-14.0.1-openmp
ADF/2014.02 MrBayes/3.2.1-intel-mpi
ADF/2014.10 MrBayes/3.2.1-intel-seq
Abinit/7.2.1-gnu-4.7.2-x86_64 NAMD/2.11-ibverbs
Abinit/7.6.4 NAMD/2.11-ibverbs-smp
AllPathsLG/r42874-gnu-4.7.1 NAMD/2.11-ibverbs-smp-CUDA
Amber/12-20150109-intel-14.0.1-openmp NAMD/2.11-multicore
Amber/12-20150109-intel-14.0.1-openmpi-1.8.4 NAMD/2.11-multicore-CUDA
Amber/12-20150109-intel-14.0.1-seq NAMD/2.9-ibverbs
Amber/12-20150109-intel-14.0.1-seq-K20-DPDP NAMD/2.9-ibverbs-smp
Amber/12-20150109-intel-14.0.1-seq-K20-SPFP NAMD/2.9-ibverbs-smp-CUDA
Amber/12-20150109-intel-14.0.1-seq-M2090-DPDP NAMD/2.9-multicore
Amber/12-20150109-intel-14.0.1-seq-M2090-SPFP NAMD/2.9-multicore-CUDA
Amber/12-intel-14.0.1-openmp NucleoMiner/1.0
Amber/12-intel-14.0.1-openmpi-1.6.4 Oases/0.2.8
Amber/12-intel-14.0.1-openmpi-1.6.4-K20-DPDP OpenAlea/2016
Amber/12-intel-14.0.1-openmpi-1.6.4-K20-SPFP OpenAlea/svn-r4239
Amber/12-intel-14.0.1-openmpi-1.6.4-M2070-DPDP PBSuite/15.2.20
Amber/12-intel-14.0.1-openmpi-1.6.4-M2070-SPFP ParaView/3.12.0
Amber/12-intel-14.0.1-seq ParaView/4.0.1
Amber/12-intel-14.0.1-seq-K20-DPDP ParaView/4.4.0
Amber/12-intel-14.0.1-seq-K20-SPFP PhyML/20120412
Amber/12-intel-14.0.1-seq-M2070-DPDP PhyML/20140223
Amber/12-intel-14.0.1-seq-M2070-SPFP PhyML/3.0
Augustus/3.1 PhyloMerge/0.2
Avogadro/1.1.1 Phylobayes/3.3b
BCFtools/1.1 Phylobayes/3.3e
BEDTools/2.24.0 Povray/3.7
BLAT/35 Prank/140603
Base/FR.UTF-8 Primer3/2.3.4
Base/debian7 Qbox/1.62.3
Base/psmn Quast/3.2
Base/sge R/2.15.1
Base/test R/3.0.2
Base/test.tcl R/3.2.0
Bismark/0.15.0 R/3.2.4
Blender/2.76b RSEM/1.2.19
Bowtie/0.12.7 RSeQC/2.3.1
Bowtie/1.1.1 RSeQC/2.3.3
Bowtie/2.0.2 SAMtools/0.1.19
Bowtie/2.2.4 SAMtools/1.1
Bwakit/0.7.12 SPAdes/3.6.2
CAFS/1.0 SRAToolkit/2.3.3-2
CP2K/2.2.426 SRAToolkit/2.3.4-2
CP2K/2.5.1 STAR/2.4.1d
CP2K/2.5.1-complete Sage/7.0
CP2K/2.5.1-minimal Spinevolution/3.4.4
Cassandra/2.5.4 Spinevolution/3.4.5
Celera/WGS-7.0 StringTie/1.0.1
Celera/WGS-8.3rc2 StringTie/1.2.0
ClonalFrameML/1.25 TopHat/2.0.13
Corset/1.03 Trimmomatic/0.36
Crystal/2.0.1 Trinity/2.0.6
Cufflinks/2.2.1 Trinity/2.1.1
DMAP/20151019 Trinity/r2012-06-08
Dalton/2016.0 Trinity/r20140413
DiscoSNP/2.2.4 Trinity/r20140717
FastQC/0.11.2 Trinotate/2.0.2
FastTree/2.1.7 UCSC/287
FreeFem++/3.42-seq VASP/4.6.36-gnu-4.7.2
GATK/3.4-46 VASP/5.3.2-intel-11.1-debian7
GDL/1.0 VASP/5.3.3-gnu-4.7.2
GFOLD/1.1.4 VASP/5.3.3-intel-14.0.1-debian7
GMAP/2014-10-22 VASP/5.3.5-intel-14.0.1-debian7
Gaussian/g03-lasim VESTA/3.1.7
Gaussian/g09-chimie VMD/1.9.2
Gaussian/g09-geol Velvet/1.2.10
Gaussian/g09c01-chimie ViennaRNA/2.1.9
Gaussian/g09c01-geol aTRAM/1.01
Gaussian/g09c01-icbms breseq/0.26.1
Gaussian/g09d01-chimie fftw/3.3.3-intel-14.0.1-openmp
Gaussian/g09d01-geol fftw/3.3.3-intel-14.0.1-openmpi-1.6.4
Gaussian/g09d01-icbms fftw/3.3.3-intel-14.0.1-openmpi-1.8.4
Gaussian/g09d01-lasim fftw/3.3.3-intel-14.0.1-seq
HDF5/1.8.15-p1-mpi fftw/3.3.4-intel-14.0.1-openmp-dp
HDF5/1.8.15-p1-seq fftw/3.3.4-intel-14.0.1-openmp-sp
HDF5/1.8.16-mpich2 fftw/3.3.4-intel-14.0.1-openmpi-1.6.4-dp
HDF5/1.8.16-openmpi fftw/3.3.4-intel-14.0.1-openmpi-1.6.4-sp
HDF5/1.8.16-seq fftw/3.3.4-intel-14.0.1-openmpi-1.8.4-dp
HISAT/0.1.5b fftw/3.3.4-intel-14.0.1-openmpi-1.8.4-sp
HISAT/2.0.0b fftw/3.3.4-intel-14.0.1-seq-dp
HMMER/3.1b1 fftw/3.3.4-intel-14.0.1-seq-sp
HTSeq/0.5.3p3 gromacs/5.0.5
HTSeq/0.5.3p9 intel/11.1.069
HTSeq/0.6.1 intel/12.0.084
HTSlib/1.1 intel/14.0.1
Java/1.6d7 intel/15.0.2
Java/1.7d7 modules.psmn
Java/1.8.0u77 openmpi/1.4.1-intel-11.1.069
Jellyfish/2.2.5 openmpi/1.4.5-gnu-4.7.2
Jmol/14.4.0 openmpi/1.5.4-gnu-4.7.2
LSDalton/2016.0 openmpi/1.5.4-intel-12.0.084
Lammps/11Nov13-mpi-1.6.4-intel-14.0.1 openmpi/1.6.4-gnu-4.7.2
Lammps/15May15-mpi-1.8.4-intel-14.0.1 openmpi/1.6.4-intel-12.0.084
Lammps/28Jun14-mpi-1.6.4-intel-14.0.1 openmpi/1.6.4-intel-14.0.1
Lammps/28Jun14-mpi-1.8.4-intel-14.0.1 openmpi/1.8.4-intel-14.0.1
Lammps/7Dec15-mpi-1.8.4-intel-14.0.1 picard/1.140
MAFFT/7.187 prinseq/lite-0.20.4
MAPS/3.4.2 python/2.7
MEME/4.10.2 python/3.2
MIRA/4.0.2 tablemaker/2.1.1
Matlab/R2011b