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Publication: up-to-date year-based records

2019

 

2018

 

 

2017

 

2016

 

2015

  • Arnaud, O., Meyer, S., Vallin, E., Beslon, G. and Gandrillon, O. (2015). Temperature-induced variation in gene expression burst size in metazoan cells. BMC Mol. Biol. 16:20
  • Gely-Pernot A., Raverdeau M., Teletin M., Vernet N., Feret B., Klopfenstein M., Dennefeld C., Davidson I., Benoit G., Mark M. and Ghyselinck N. (2015) .Retinoic Acid Instructs Spermatogonia Cell-Fate through Cell-Autonomously Controlling Expression of the SALL4A Transcription Factor. Plos Genet. 11(10), e1005501
  • Chatagnon A., Veber P., Morin V., Bedo J., Triqueneaux G., Sémon M., Laudet V., d’Alché-Buc F. and Benoit G. (2015). RAR/RXR binding dynamics distinguishes pluripotency from differentiation associated cis-regulatory elements. Nucleic Acids Res. 43(10), 4833-4854
  • Crauste, F., Terry, E., Mercier, I.L., Mafille, J., Djebali, S., Andrieu, T., Mercier, B., Kaneko, G., Arpin, C., Marvel, J. and Gandrillon, O. (2015). Predicting pathogen-specific CD8 T cell immune responses from a modeling approach. J Theor Biol. 374, 66–82
  • Cellier, P., Charnois, T., Plantevit, M., Rigotti, C., Crémilleux, B., Gandrillon, O., Kléma, J. and Manguin, J.-L. (2015). Sequential Pattern Mining for Discovering Gene Interactions and their Contextual Information from Biomedical Texts. Journal of Biomedical Semantics (in the press)
  • Eymard, N., Bessonov, N., Gandrillon, O., Koury, M.J. and Volper, V. (2015). The role of spatial organization of cells in erythropoiesis. J. Math. Biol. 70, 71-97

 

2014

  • Corre, G., Stockholm, D., Arnaud, O., Kaneko, G., Viñuelas, J., Yamagata, Y., Neildez-Nguyen, T. M. A., Kupiec, J.-J., Beslon, G., Gandrillon, O., and Paldi, A. (2014). Stochastic fluctuations and distributed control of gene expression impact cellular memory. Plos ONE (0115574)
  • Prokopiou, S.A., Barbarroux, L., Bernard, S., Mafille, J., Leverrier, Y., Arpin, C., Marvel, J., Gandrillon, O. and Crauste, F. (2014). Multiscale modeling of the early CD8 T cell immune response in lymph nodes : an integrative study. Computation 2, 159-181.

 

2013

  • Chatonnet F., Guyot R., Benoit G. and Flamant F. (2013). Genome wide analysis of thyroid hormone receptors shared and specific functions in neural cells. Proc Natl Acad Sci USA; E766-E775
  • Joly-Tonetti, N., Viñuelas, J., Gandrillon, O. and Lamartine, J. (2013). Differential miRNA expression profiles in proliferating or differentiated keratinocytes in response to gamma irradiation. BMC Genomics 14:184.
  • Viñuelas*, J., Kaneko*, G., Coulon, A., Vallin, E., Morin, V., Mejia-Pous, C., Kupiec, J.-J., Beslon, G. and Gandrillon, O. (2013). Quantifying the contribution of chromatin dynamics to stochastic gene expression reveals long, locus-dependent periods between transcriptional bursts. BMC Biology 11:15. * equal contributors
  • Nguyen-Lefebvre, A.T., Leprun, G., Morin, V., Viñuelas, J., Couté, Y., Madjar, J.-J., Gandrillon, O. and Gonin-Giraud, S. (2013). V-erbA generates ribosomes devoid of RPL11 and regulates translational activity in avian erythroid progenitors. Oncogene (in the press).
  • Mougel, P-N., Rigotti, C., Plantevit, M. and Gandrillon, O. (2013). Finding Maximal Homogeneous Clique Sets. Knowledge and Information Systems (published online : 27 march 2013).

 

2012

  • Raverdeau M., Gely-Pernot A., Féret B., Dennefeld C., Benoit G., Davidson I., Chambon P., Mark M. and Ghyselinck N.B. Retinoic Acid induces Sertoli cell paracrine signal for spermatogonia differentiation but cell autonomously drives spermatocyte meiosis. Proc Natl Acad Sci USA : 109(41):16582-7. 2012.
  • Moutier E., Ye T., Choukrallah M-A., Urban S., Osz J., Chatagnon A., Delacroix L., Langer D., Rochel N., Moras D., Benoit G., and Davidson I. Retinoic acid receptors recognise the mouse genome through binding elements with diverse spacing and topology. J Biol Chem : 287(31) : 26328-41. 2012
  • Gandrillon, O., Kolesnik-Antoine, D., Kupiec, J.J. and Beslon, G. (2012). Chance at the heart of the cell. Progress in Biophysics & Molecular Biology 110, pp 1-4.
  • Viñuelas, J., Kaneko, G., Coulon, A., Beslon , G. and Gandrillon, O. (2012). Toward experimental manipulation of stochasticity in gene expression. Progress in Biophysics & Molecular Biology, 110, pp 44-53.
  • Terry, E., Marvel, J., Arpin, C., Gandrillon, O. and Crauste F. (2012).Mathematical model of the primary CD8 T cell immune response : stability analysis of a nonlinear age-structured system. J. Math. Biol. 65, Number 2, Pages 263-291.
  • Fischer, S., Kurbatova, P., Bessonov, N., Gandrillon, O., V. Volpert, V., and Crauste, F. (2012). Modelling erythroblastic islands : using a hybrid model to assess the function of central macrophage. Journal of Theoretical Biology, 298, 92–106.

 

2011

  • Pellerin, M. and Gandrillon, O. (2011). Querying formal concepts containing transcription factors : a case study using multiple databases. Journal of Computational Biology and Bioinformatics Research 3(6), pp. 83-90.
  • Mejia-Pous, C., Damiola, F. and Gandrillon, O. (2011). The cholesterol synthesis-related enzyme oxidosqualene cyclase is required to maintain self-renewal in primary erythroid progenitors. Cell Proliferation, 44, 441-452.
  • Lalevée S., Anno Y.N., Chatagnon A., Samarut E., Poch O., Laudet V., Benoit G., Lecompte O. and Rochette-Egly C. Genome-wide in silico identification of new conserved and functional DR5 retinoic acid receptors response elements. J Biol Chem : 286(38):33322-34. 2011

 

2010

  • Royer, C., Briolay, J., Garel, A., Brouilly, P., Sasanuma, S.-I., Sasanuma, M., Shimomura, M., Keime, C., Gandrillon, O., Huang, Y., Chavancy, G., Mita, K. and Couble P. (2010). Novel genes differentially expressed between posterior and median Silk gland identified by SAGE-aided transcriptome analysis. Insect Biochemistry and Molecular Biology, 41:118-24.
  • Nguyen-Lefebvre, A.-T., Gonin-Giraud, S., Scherl, A., Arboit, P., Granger, L., Sanchez, J.-C., Diaz J.-J., Gandrillon, O. and Jean-Jacques Madjar, J.-J. (2010). Identification of human, rat and chicken ribosomal proteins by a combination of two-dimensional polyacrylamide gel electrophoresis and mass spectrometry. Journal of Proteomics 74:167-85.
  • Crauste, F., Demin, I., Gandrillon, O. and Volpert, V. (2010). Mathematical study of feedback control roles and relevance in stress erythropoiesis. Journal of Theoretical Biology 263 : 303-316
  • Coulon A., Gandrillon, O. and Beslon, G. (2010). On the spontaneous stochastic dynamics of a single gene : complexity of the molecular interplay at the promoter BMC Systems Biology,4:2.
  • Demin, I., Crauste, F., Gandrillon, O. and Volpert, V. (2010). A multi-scale model of erythropoiesis. J. Biol. Dynamics, 4:59-70

 

2009

  • Sassi-Messai S., Gibert Y., Bernard L., Nishio S.I., Ferri K.F., Molina J., Andersson- Lendahl M., Benoit G., Balaguer P. and Laudet V. The phytoestrogen genistein affects zebrafish development through two different pathways. PlosOne : 4(3) : e4935. 2009
  • Rambaud J., Triqueneaux G., Masse I., Staels B., Laudet V. and Benoit G. Rev-erbα2 mRNA encodes a stable protein likely to play a role in circadian clock regulation. Mol Endocrinol : 23(5) : 630-639. 2009
  • Osborne P.W., Benoit G., Laudet V., Schubert M., and Ferrier D.E.K. Differential regulation of ParaHox genes by retinoic acid in the invertebrate chordate amphioxus (Branchiostoma floridae). Dev Biol : 327(1) : 252-62. 2009
  • Silberstein, M., Kupiec, J.-J. and Gandrillon, O. (2009). De la nécessité du hasard en biologie. Chapter in Le Hasard au coeur de la cellule, Éditions Matériologiques , 5-18.
  • Coulon, A., Beslon, G., Chatelain, F., Fuchs, A., Gandrillon, O., Gineste, M., Kupiec, J.-J., Mejia-Perez, C. and Paldi A. (2009). Mécanismes moléculaires et fonction biologique de la variabilité de l’expression génique à l’échelle de la cellule unique : une approche systémique. Chapter in Le Hasard au coeur de la cellule, Éditions Matériologiques , 59-78.
  • Mejia-Pous, C., Viñuelas, J., Faure, C., Koszela, J., Kawakami, K., Takahashi,, Y. and Gandrillon, O. (2009). A combination of transposable elements and magnetic cell sorting provides a very efficient transgenesis system for chicken primary erythroid progenitors BMC Biotechnology 2009, 9:81
  • Boyer L., Gandrillon O., Habrard A., Pellerin M., Sebban M. "Learning Constraii ned Edit State Machines" Proceedings 21st IEEE Int. Conf. on Tools with Artificial Intelligence (ICTAI’09),, Newark, New Jersey, USA, November 2009.
  • Crémilleux B., Soulet A., Klema J., Hébert C., Gandrillon O. Discovering Knowledge from Local Patterns in SAGE data. In Data Mining and Medical Knowledge Management : Cases and Applications, IGI Global publications, pp. 251-267, 2009.

 

2008

  • Schubert M., Brunet F., Paris M., Bertrand S., Benoit G. and Laudet V. Nuclear hormone receptor signaling in amphioxus. Dev Genes Evol : 218(11-12):651-65. 2008
  • Pantalacci S., Chaumot A., Benoit G., Sadier A., Delsuc F, Douzery E. and Laudet V. Conserved features and evolutionary shifts of the EDA signaling pathway involved in vertebrate skin appendage development. Mol Biol Evol : 25(5):912-28. 2008
  • Cai W., Rambaud J., Teboul M., Masse I., Benoit G., Gustafsson J.A., Delaunay F., Laudet V., and Pongratz I. Expression levels of ERβ are modulated by components of the molecular clock. Mol Cell Biol : 28(2), 784-793. 2008
  • Mitasiunaite, I., Rigotti, C., Schicklin, S., Meyniel, L., Boulicaut, J .-F. and Gandrillon, . O. (2008). Extracting signature motifs from promoter sets of differentially expressed genes. In Silico Biology, 8:0043.
  • Leyritz, L., Schicklin, S., Blachon, S., Keime, C., Robardet, C., Boulicaut, J.-F., Besson, J., Pensa, R. G. and Gandrillon, O. (2008). SQUAT : a web tool to mine human, murine and avian SAGE data. BMC Bioinformatics 9:378.
  • Hanriot*, L., Keime*, C., Gay, N., Faure, C., Dossat, C., Wincker, P., Scoté-Blachon, C., Peyron, C. and Gandrillon, O. (2008)A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome. BMC Genomics 9:418. * equal contributors
  • Coulon A, Beslon G, Gandrillon O. (2008). Large multiprotein structures modeling and simulation : the need for mesoscopic models. Methods Mol Biol. 484:537-58.
  • Gonin-Giraud S, Bresson-Mazet C, Gandrillon O. (2008). Involvement of the TGF-beta and mTOR/p70S6Kinase pathways in the transformation process induced by v-ErbA. Leuk Res. 32, 1878-1888
  • Klema, J., Blachon, S., Soulet, A. , Cremilleux, B and Gandrillon, O. (2008). Constraint-Based Knowledge Discovery from SAGE Data In Silico Biology 8, 0014.
  • Bresson, C., Gandrillon, O. and Gonin-Giraud, S. (2008). sca2 : a new gene involved in the self-renewal of erythroid progenitors. Cell Proliferation 41, 726-738.
  • Crauste, F., Pujo-Menjouet, L., Génieys, S., Molina, C. and Gandrillon, O. (2008). Adding Self-Renewal in Committed ErythroidProgenitors Improves the Biological Relevanceof a Mathematical Model of Erythropoiesis. Journal of Theoretical Biology 250, 322-338.

 

2007

  • Bresson, C., Keime, C., Faure, C., Letrillard, Y., Barbado, M., Sanfilippo, S., Benhra, N., Gandrillon, O. and Gonin-Giraud, S. (2007). Large-scale analysis by SAGE reveals new mechanisms of v-erbA oncogene action. BMC Genomics 8, 390.
  • Blachon, S., Pensa, R.G., Besson, J., Robardet, C, Boulicaut, J.-F. and Gandrillon, O. (2007) Clustering formal concepts to discover biologically relevant knowledge from gene expression data. In Silico Biol. 7, 0033
  • Keime, C., Sémon, M., Mouchiroud, D., Duret, L. and Gandrillon, O. (2007). Unexpected observations after mapping LongSAGE tags to the human genome. BMC Bioinformatics 2007, 8:154
  • Coulon, A., Soula, H., Mazet, O., Gandrillon, O. and Beslon, G. (2007). Modélisation cellulaire pour l’émergence de structures multiprotéiques auto-organisées. Technique et Science Informatiques (TSI) 26, 123-148.

 

2006

  • Volakakis N., Malewicz M., Kadkodhai B., Perlmann T. and Benoit G. Characterization of the Nurr1 ligand binding domain coactivator interaction surface. J Mol Endocrinol : 37, 317-326. 2006.
  • Rosinski-Chupin, I., Briolay, J., Brouilly, P., Perrot, S., Gomez, S.M., Chertemps, T., Roth, C.W., Keime, C., Gandrillon, O., Couble, P. and Brey, P.T. (2006). SAGE analysis of mosquito salivary gland transcriptomes during Plasmodium invasion. Cellular Microbiology 9, 708-724.
  • Dazy, S., Gandrillon, O., Hyrien O. and Prioleau, M.-N. (2006). Activation of stage-specific DNA replication origins during metazoan cell differentiation. EMBO Rep 7, 806-811.
  • Benoit G., Cooney A., Giguere V., Ingraham H., Lazar M., Muscat G.E., Perlmann T., Renaud J.P., Schwabe J.W.R., Sladek F.M., Tsai M.J. and Laudet V. Orphan Nuclear Receptors. Pharmacological Reviews : 58, 798-836. 2006.

 

2005

  • Soula, H. Robardet, C., Perrin, F., Gripon, S., Beslon, G. and Gandrillon O. (2005). Modeling the emergence of multi-protein dynamic structures by principles of self-organization through the use of 3DSpi, a Multi-Agent-based Software. BMC Bioinformatics 6, 228.
  • Huang, J., Miao, X., Jin, W., Couble, P., Mita, K., Zhang, Y., Liu, W., Zhuang, L, Shen, Y., Keime, C., Gandrillon, O., Brouilly, P., Briolay, J., Zhao, G. and Huang, Y. (2005). Serial analysis of gene expression (SAGE) in the silkworm, Bombyx mori. Genomics 86, 233-241.

 

2004

  • Codina A., Benoit G., Gooch J.T., Neuhaus D., Perlmann T., and Schwabe J.W.R. Identification of a Novel Co-regulator Interaction Surface on the Ligand Binding Domain of nurr1 using NMR Footprinting. J Biol Chem : 279, 53338-53345. 2004.
  • Keime, C., Damiola, F., Mouchiroud, D., Duret, L. and Gandrillon, O. (2004). Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries. BMC Bioinformatics 5, 143
  • Damiola, F., Keime, C., Gonin-Giraud, S., Dazy, S., and Gandrillon, O. (2004). Global transcription analysis of immature avian erythrocytic progenitors : from self-renewal to differentiation. Oncogene 23, 7628-7643.
  • Blachon, S., Robardet, C., Boulicaut J.F. et Gandrillon, O. (2004). Extraction de connaissances dans les données d’expression SAGE humaines. Informatique pour l’Analyse du Transcriptome. Hermes Science, traité IC2 2004.
  • Gandrillon, O., Houlgatte, R. (2004). Le transcriptome : Le nouveau monde ? Informatique pour l’Analyse du Transcriptome. Hermes Science, traité IC2 2004
  • Benoit G., Malewicz M. and Perlmann T. Digging deep into the pockets of orphan nuclear receptors : insights from structural studies. Trends Cell Biol : 14, 369-76. 2004

 

2003

  • Nordzell M., Aarnisalo P., Benoit G., Castro D.S., and Perlmann T. Defining an N-terminal Activation Domain of the orphan nuclear receptor Nurr1. Biochem Biophys Res Commun : 313, 205-211. 2003.
  • Joseph B., Wallén Å., Benoit G., Murata T., Joodmardi E., Okret S., and Perlmann T. p57kip2 cooperates with Nurr1 in developing dopamine cells. Proc Natl Acad Sci USA : 100, 15619-15624. 2003.
  • Chelbi-alix M.K., Bobé P., Benoit G., Canova A. and Pine R. Arsenic enhances the activation of Stat1 by interferon γ leading to synergistic expression of IRF-1. Oncogene : 22, 9121-9130. 2003
  • Hermanson E., Joseph B., Castro D., Lindqvist E., Aarnisalo P., Wallén Å., Benoit G., Hengerer B., Lars Olson L., and Perlmann T. Nurr1 regulates dopamine synthesis and storage in MN9D cells. Exp Cell Res : 288, 324-334. 2003
  • Benoit G.*, Wang Z.*, Liu J., Prasad S., Aarnisalo P., Liu X., Xu H., Walker N., and Perlmann T. Structure and function of Nurr1 reveals a novel class of ligand-independent nuclear receptors. Nature : 423, 555-559. 2003 (*co-auteurs)
  • Gandrillon, O. (2003). Les gènes du cancer. Sciences et Avenir Hors Série, 136 70-74.
  • Dazy, S., Damiola, F., Parisey, N., Beug, H. and Gandrillon, O. (2003) The MEK-1/ ERKs signalling pathway is differentially involved in the self-renewal of early and late avian erythroid progenitor cells. Oncogene 22, 9205-9216.
  • Rioult, F., Robardet, C., Blachon, S., Crémilleux, B., Gandrillon, O., Boulicaut J.F. (2003). Mining concepts from large SAGE gene expression matrices. Proceedings of the 2nd International Workshop on Knowledge Discovery in Inductive Databases KDID’03 co-located with ECML-PKDD 2003, Catvat-Dubrovnik (Croatia), September 22, 2003.

 

2002

  • Becquet, C., Blachon, S., Jeudy, B., Boulicaut, J.F. and Gandrillon, O. (2002). Strong association rule mining for large gene expression data analysis : a case study on human SAGE data . Genome Biology 3, research0067.1-0067.16
  • Gandrillon, O. (2002). The v-erbA oncogene. Assessing its differentiation-blocking ability using normal chicken erythrocytic progenitor cells. Methods Mol Biol 202, 91-107.

 

2001

  • Zhu, J. Heyworth, CM, Huang H-Q, Petrie, K., Lanotte, M., Benoit G., Gallagher, G., Waxman, S., Enver, T and Zelent A. Lineage restriction of RARα gene expression in myeloid differentiation. Blood : 98(8), 2563-2567. 2001
  • Benoit G., Flexor M., Besancon F., Altucci L., Rossin A., Hillion J., Balajthy Z., Legres L., Segal-Bendirdjian E, Gronemeyer H. and Lanotte M. Autonomous rexinoid death signaling is suppressed by converging signaling pathways in immature leukemia cells. Mol Endocrinol : 15, 1154-1169. 2001
  • Idres N., Benoit G., Flexor M., Lanotte M. and Chabot G.G. Granulocytic differentiation of human NB4 promyelocytic leukemia cells induced by all-trans retinoic acid metabolites. Cancer Res : 61, 700-705. 2001
  • Braliou, G.G., Ciana, P., Klaassen, W., Gandrillon, O. and Stunnenberg, H.G. (2001). The v-ErbA oncoprotein quenches the activity of an erythroid-specific enhancer. Oncogene 20, 775-787.
  • Bauer, A., Gandrillon, O., Samarut, J., and Beug, H. (2001). Nuclear receptors in hematopoietic development : cooperation with growth factor receptors in regulation of proliferation and differentiation. In Hematopoiesis : a developmental approach, L. Zon, ed. (New York : Oxford University Press), pp 368-390.
  • Benoit G., Roussel M.J.S, Pendino F., Ségal-Bendirdjian E. and Lanotte M. Orchestration of multiple arrays of signal cross-talk and combinatorial interactions for maturation and cell death : another vision of t(15 ;17) preleukemic blast and APL-cell maturation. Oncogene : 20, 7161-7177. 2001
  • Benoit G., Tong J.H., Balajthy Z., and Lanotte M. Exploring (novel) gene expression during retinoid-induced maturation and cell death of acute promyelocytic leukemia. Semin Hematol : 38(1),71-85. 2001

 

2000

  • Tong J.H., Fant X., Benoit G., Chen S., Chen Z. and Lanotte M. Genomic Organization of the JEM-1 (BLZF1) Gene on Human Chromosome 1q24 : Molecular Cloning and Analysis of Its Promoter Region. Genomics : 69(3), 380-390. 2000
  • Duprez E., Benoit G., Flexor M., Lillehaug J. and Lanotte M. A mutated PML/RARA found in the retinoid maturation resistant NB4 subclone, NB4-R2, blocks RARA and wild type PML/RARA transcriptional activities. Leukemia : 14(3), 255-261. 2000

 

1999

  • Benoit G., Altucci L., Flexor M., Ruchaud S., Lillehaug J., Raffelsberger W., Gronemeyer H. and Lanotte M. RAR-independent RXR signaling induces t(15 ;17) leukemia cell maturation. EMBO J : 18(24), 7011-7018. 1999
  • Gandrillon, O., Mey, A.. and Samarut, J. (1999). Plasticité insoupçonnée des progéniteurs érythrocytaires. Médecine/Science 15, 1295-1297.
  • Gandrillon, O., Schmidt, U., Beug, H. and Samarut, J. (1999). TGFbeta cooperates with TGFalpha to induce the self-renewal of normal erythrocytic progenitors : Evidence for an autocrine mechanism. EMBO J. 18, 2764-2781.
  • Benoit G., Balajthy Z., Tong, J.H., Hillion J., Duprez E., Chen S.J., Chen Z. and Lanotte M. Molecular approaches to identify novel genes involved in Programmed Cell Death. Development of Methods for Determination of Radiosensitivity, 108-116. 1999

 

1998

  • Tong J.H., Fant X., Duprez E., Benoit G., Uphoff C.C., Drexler H.G., Pla J.C., Lofvenberg E. and Lanotte M. Expression patterns of the JEM-1 gene in normal and tumor cells : ubiquity contrasting with a faint, but retinoid-induced, mRNA expression in promyelocytic NB4 cells. Leukemia : 11, 1733-1740. 1998
  • Gianni M., Koken M.H.M., Chelbi-Alix M.K., Benoit G., Lanotte M., Chen Z. and de Thé H. Combined arsenic and retinoic acid treatment promotes differentiation and apoptosis in arsenic-resistant NB4 cells. Blood : 91(11), 4300-4310. 1998

 

1995

  • Bruel A., Benoit G., De Nay D., Brown S. and Lanotte M. Distinct apoptotic responses in maturation sensitive and resistant t(15 ;17) acute promyelocytic leukemia NB4 cells. 9-cis retinoic acid induces apoptosis independent of maturation and Bcl-2 expression. Leukemia : 9, 1173-1184. 1995

 

 

Communications 

Gandrillon, O. (2016). Single-cell analyses reveal a link between cell-to-cell variability and irreversible commitment during differentiation. ICSB 2016

Gandrillon, O. (2012). Quantification of chromatin dynamics contribution to stochasticity in eukaryotic gene expression reveals a highly bursty regime with long quiet states. Journées pleinières du GDR 3070

Coulon, A., Chow, C. C., Gandrillon, O. and Beslon, G. (2011). Multi-timescale modeling of promoter chromatin dynamics and cofactor recruitment. Chromatin Dynamics, Keystone Symposia.
Coulon, A., Chow, C. C., Gandrillon, O. and Beslon, G. (2011). Modeling the dynamics of promoter chromatin and cofactor recruitment at various timescales. Mechanisms of eukaryotic transcription Cold Spring Harbor Laboratory.
Gandrillon, O. (2011). Chromatin dynamics is a key player in regulating gene expression stochasticity in higher eukaryotic cells. Semovi, Lyon
Gandrillon, O. (2011). La dynamique chromatinienne est un paramètre majeur de l’expression probabiliste des gènes. XXXIème Séminaire de la SFBT, Autrans.
Viñuelas, J., Kaneko, G., Morin, V., Vallin, E., Coulon, A., Mejia-Pous, C., Rouberol, B., Beslon, G. and Gandrillon, O.(2010). Chromatin is a major player in regulating gene expression stochasticity in higher eukaryotic cells. Gordon Research Conference, Stochastic Physics in Biology, Ventura.
Gandrillon, O. (2010). Relationship between chromosomal features and gene expression stochasticity in higher eukaryotic cells Noise in Life, Benasque
Gandrillon, O. (2010). Multi-scale modelling of the primary CD8 T-cell response System Biology and Immune Response Veyrier-du-lac
Gandrillon, O. (2010). Relationship between chromosomal features and gene expression stochasticity in higher eukaryotic cells.WCSB 2010, Luxembourg
Gandrillon, O. (2010). Relationship between chromosomal features and gene expression stochasticity in higher eukaryotic cells. Atelier interdisciplinaire « Du désordre moléculaire aux programmes cellulaires : microscopie et modélisation », Lile
Lefebvre, AT., Madjar, JJ., Gandrillon,O and Gonin-Giraud, S. (2009). The v-erbA oncogene induces variations in ribosomal protein gene expression. Protein Translation and Cancer, Coronado.
Viñuelas, J., Kaneko, G., Coulon, A, Beslon, G. and Gandrillon O (2009). Relationship between chromosomal features and gene expression stochasticity in higher eukaryotic cells. Integrative Post Genomics (IPG ‘09), Villeurbanne, France.
Gandrillon, O. (2009). A system’s biology approach to understand stochasticity in gene expression Edition 2009 de la Journée de l’IXXI, Grenoble
Mejia-Pous, C. and Gandrillon, O. (2009). Cholesterol synthesis, modulated by the Oxidosqualene Cyclase gene expression, maintains primary immature erythroid progenitors in a self-renewal state 16eme congrès du CHO, Giens
Gandrillon, O. (2009). A system’s biology approach to understand stochasticity in gene expression Modelling Complex Biological Systems in the Context of Genomics Nice
Gandrillon, O. (2008). A system’s biology approach to understand stochasticity in gene expression Workshop on heterogeneity and transcriptional noise in cell populations Cambridge.
Lefebvre, A.T., Gonin-Giraud, S., Madjar, J.J. and Gandrillon, O. (2008). The v-erbA oncogene induces variations in ribosomal protein gene expression. IPG’08, LYON, 20-21 Novembre 2008
Crauste, F., Pujo-Menjouet, L., Génieys, S. and Gandrillon, O. (2007). Adding Self-Renewal in Committed ErythroidProgenitors Improves the Biological Relevance of a Mathematical Model of Erythropoiesis. 14ème congrès du CHO Giens France.
Mejia-Perez, C., Damiola, F., Faure, C. and Gandrillon, O. (2007). Role of Cholesterol Synthesis in Avian Erythrocytic Progenitors Self-Renewal. 14ème congrès du CHO Giens France.
Leyritz, J., Keime, C., Blachon, S., Robardet, C., Boulicaut, J.F., Besson, J., Pensa, R.G. and Gandrillon, O. (2007). SQUAT : a web tool to browse chicken sage data. International Chick Meeting, Barcelona
Bresson, C., Keime, C., Faure, C., Letrillard, Y., Mitasiunaite, I., Rigotti, C., Boulicaut, J.F., Bendjeladi, A.,Benhra, , N., Gandrillon, O. and Gonin-Giraud, S. (2007). New mechanisms of v-ErbA oncogene action revealed by SAGE analysis. International Chick Meeting, Barcelona
Gandrillon, O. (2006).Quelques problèmes ouverts en Biologie (moléculaire) contemporaine. Laboratoire de Physique Nucléaire et de Hautes Energies Paris, France
Gandrillon, O. (2006). De l’intérèt des SMAs pour modéliser des structures biologiques et leur évolution dans le temps et l’espace. 11èmes journées de Gerland Lyon, France
Gandrillon, O. (2006) Le poulet : d’un modèle en cancérologie vers un modèle en biologie des systèmes. 32ème journées d’études scientifiques et techniques AFSTAL 2006. Bordeaux, France.
Bresson, C., Keime, C., Faure, C., Letrillard, Y., Mitasiunaite, I., Rigotti, C., Boulicaut, J.F., Bendjeladi, A.,Benhra, , N., Gandrillon, O. and Gonin-Giraud, S. (2006). New mechanisms of v-ErbA oncogene action revealed by SAGE analysis. IPG’06, Lyon, France.
Bresson, C., Keime, C., Faure, C., Bendjeladi, A., Benhra, N., Gandrillon, O. and Gonin-Giraud, S. (2006). Analyse du transcriptome de progéniteurs érythrocytaires exprimant l’oncogène v-erbA. 13ème congrès du CHO Giens France.
Dazy, S., Gandrillon, O., Hyrien, O. and Prioleau, M.-N. (2005). Activation of tissue specific origins at the chicken b-globin locus is coupled to gene activation and chromatin decondensation Workshop on chromosome duplication and segregation, 2-5 May, Trieste, Italy.
Bresson, C., Keime, C., Faure, C., Bendjeladi, A.,Benhra, , N., Gandrillon, O. and Gonin-Giraud, S. (2006).A better comprehension of the mechanisms underlying transformation by the v-erbA oncogene. Nuclear Receptors : Bench to Bedside Cold Spring Harbor, USA.
Klema, J., Soulet, A., Crémilleux, B., Blachon, S., Gandrillon, O. (2006). Mining Plausible Patterns from Genomic Data. In 19th IEEE International Symposium on Computer-Based Medical Systems , pages 90-101, Salt Lake City, Utah.
Dazy, S., Gandrillon, O., Hyrien, O. and Prioleau, M.-N. (2005). Plasticité de la réplication au cours de l’érythropoïèse. 6ème Colloque des 3R (Réplication, Réparation, Recombinaison), 19-22 Juin, Presqu’ile de Giens
Robardet, C., Soula, H., Frugier, K., Belin, S., Diaz, J.-J., Gandrillon, O., and Beslon, G. (2005). Multi-agent modeling of dynamic multi-protein cellular structures. JOBIM 2005, Lyon, France
Keime C., Duret L., Mouchiroud D. and Gandrillon O. (2005). Are transcriptomes evolutionary constrained ? : a comparative transcriptomic analysis using SAGE data. JOBIM 2005, Lyon, France
Blachon, S., Pensa, R., Besson, J., Robardet, C., Boulicaut J.-F. and Gandrillon, O. (2005). A complete scenario of extraction of formal concepts in SAGE data aimed at discovering new biological knowledge. JOBIM 2005, Lyon, France
Keime, C., Faure, C., Damiola, F., Dazy, S., Gonin-Giraud, S., Bresson, C. and Gandrillon, O. (2005). A study of self-renewal by transcriptome analysis of chicken erythrocytic progenitors Workshop on CHICKEN GENOMICS & DEVELOPMENT, Cold Spring Harbor Laboratory, USA
Dazy, S., Gandrillon, O., Hyrien, O. and Prioleau, M.-N. (2005). Activation of tissue specific origins at the chicken b-globin locus is coupled to gene activation and chromatin decondensation Workshop on chromosome duplication and segregation, 2-5 May, Trieste, Italy
Gonin-Giraud, S., Keime, C., Bresson, C., Faure, C. and Gandrillon, O. (2004). SAGE transcriptomic analysis of avian erythrocytic progenitors expressing the v-erbA oncogene. IPG’04, Lyon, France
Soula, H., Robardet, C., Frugier, K., Perrin, F., Gripon, S., Beslon, G. and Gandrillon, O. (2004). Evidence that multi-protein dynamic structures are formed and maintained by principles of self-organization through the use of 3DSpi, a Multi-Agent-based Software. IPG’04, Lyon, France
Dazy, S., Keime, C., Blachon, S., Damiola, F., Faure, C. and Gandrillon, O. (2004). A SAGE approach for the identification of MEK1/ERK target genes in chicken primary self-renewing erythroid progenitors. IPG’04, Lyon, France
Damiola, F. (2004). A SAGE approach to identify genes involved in self-renewal. SAGE sattelite meeting to IPG’04, Lyon, France
Keime, C., Damiola, F., Mouchiroud, D., Duret, L. et Gandrillon, O. (2004). Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries. JOBIM 2004, Montréal, Canada.
Gonin-Giraud, S., Bresson, C. et Gandrillon, O. (2003). Interférence de l’oncogène v-erbA avec les voies de signalisation initiées par le TGFbeta dans des cellules souches érythrocytaires Première journée d’onco-hématologie et de thérapie cellulaire, Lyon, France, 3 Novembre 2003.
Dazy, S., Damiola, F., Keime, C. Faure, C. et Gandrillon, O. (2003). Utilisation d’une approche transcriptomique pour l’identification des cibles transcriptionnelles d’une voie de signalisation essentielle à un processus d’autorenouvellement Première journée d’onco-hématologie et de thérapie cellulaire, Lyon, France, 3 Novembre 2003.
Briolay, J., Brouilly, P., Keime, M., Gandrillon, O., Sanamura, S.I., Kasuey, M., Couble, P. (2003). SAGE-aided transcriptome analysis of the silk gland cells of Bombyx mori. Sixth International Workshop on the Molecular Biology and Genetics of Lepidoptera, Kolympari, Grèce, 24-30 Août 2003.
Damiola, F., Faure, C., Dazy, S., Keime, C., Gonin-Giraud, S., Robardet, C. Blachon, S., Derrington, E. and O. Gandrillon (2003). A global approach to identify the molecular basis of stem cell self-renewal. Colloque "Génomique des animaux d’élevage" Seignosse-le-Penon, France.
Damiola, F., Dazy S., Keime, C., Gonin-Giraud S., and O. Gandrillon (2003). A global approach to identify the molecular basis of avian erythrocytic stem cell self-renewal. SAGE 2003 Amsterdam, The Netherlands
Olivier Gandrillon, Jean-François Boulicaut, Céline Robardet, Sylvain Blachon, Jérémy Besson et Sophie Rome (2003). Recherche de groupes de gènes intéressants dans des données d’expression : apport des ensembles fréquents. EGC’ 2003 Lyon, France
Becquet, C., Jeudy, B., J.F. Boulicaut, J.F., S. Blachon, S., and Gandrillon, O. (2002). Strong association rule mining for large gene expression data analysis : a case study on human SAGE data. JPGD ’02 Villeurbanne, France
Damiola, F., Dazy, S. and Gandrillon, O. (2002) A global approach to identify the functions involved in erythocytic stem cells self-renewal. JPGD ’02 UCBL Villeurbanne, France
Becquet, C .,Charavay, C., Herr, A., Martin, T., Morle, F., Deandrea, A., Beslon, G. and Gandrillon, O. (2002). Modeling protein-protein interactions by using Multi-Agents Systems. JPGD ’02 UCBL Villeurbanne, France
Beslon, G., Charles, H., Fayard, J.M., Gandrillon, O. Mazet, O. and Soula, H. (2002). Functional Space Approach for Evolutionary Algorithms. JPGD ’02 UCBL Villeurbanne, France
Damiola F., Dazy S., Gonin-Giraud S., and Gandrillon O. (2002). Une approche globale pour l’identification des mécanismes moléculaires impliqués dans l’auto-renouvellement des cellules souches érythrocytaires. 9ème Congrès. du CHO Giens France
Beslon, G., Charles, H., Fayard, J.M., Gandrillon, O. and Mazet, O. (2002). Modeling evolution through a genetic regulation network. JPGD ’02 UCBL Villeurbanne, France
Dazy, S., Damiola, F., Briolay, J and Gandrillon, O. (2001). Contrôle moléculaire de l’autorenouvellement et de la différenciation de cellules souches érythrocytaires aviaires : une analyse globale par SAGE. JPGD ’01 UCBL Villeurbanne, France
Dazy, S. and Gandrillon, O. (2000). Changements d’identités : le transductosome dans tous ses états. 7ème congrés du CHO. Giens, France.
Gandrillon, O. and Dazy, S. (2000). Self-renewal versus Differentiation : Decision-making in an erythrocytic stem cell. 15e Colloque Franco-Japonais de Coopération en Recherche sur le Cancer. Strasbourg, France
Gandrillon, O. (2000). Autorenouvellement/Différenciation/Apoptose : la cellule souche dans tous ses états. 7ème congrés du CHO. Giens, France.
Dazy, S. and Gandrillon, O. (2000). Transduction d’un signal d’autorenouvellement et de différenciation dans des progéniteurs érythrocytaires normaux. 6èmes journées scientifiques de Gerland. Lyon, France.

Patents 

Benoit G., Gottardis M., Gronemeyer H., Lanotte M. A composition and method for treatment of a hyperproliferative Disease. US Patent 6,624,154. 2003