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You are here: Home / Teams / Systems Biology of Decision Making - O. Gandrillon / Publications (not up to date)

Publications (not up to date)

This folder holds the following references to publications, sorted by year and author.

There are 90 references in this bibliography folder.

Crauste, F, Mafille, J, Boucinha, L, Djebali, S, Gandrillon, O, Marvel, J, and Arpin, C (2017).
Identification of Nascent Memory CD8 T Cells and Modeling of Their Ontogeny.
Cell Syst, 4(3):306-317.e4.

Gao, X, Arpin, C, Marvel, J, Prokopiou, SA, Gandrillon, O, and Crauste, F (2016).
IL-2 sensitivity and exogenous IL-2 concentration gradient tune the productive contact duration of CD8(+) T cell-APC: a multiscale modeling study.
BMC Syst Biol, 10(1):77.

Richard, A, Boullu, L, Herbach, U, Bonnafoux, A, Morin, V, Vallin, E, Guillemin, A, Papili Gao, N, Gunawan, R, Cosette, J, Arnaud, O, Kupiec, J, Espinasse, T, Gonin-Giraud, S, and Gandrillon, O (2016).
Single-Cell-Based Analysis Highlights a Surge in Cell-to-Cell Molecular Variability Preceding Irreversible Commitment in a Differentiation Process.
PLoS Biol, 14(12):e1002585.

Arnaud, O, Meyer, S, Vallin, E, Beslon, G, and Gandrillon, O (2015).
Temperature-induced variation in gene expression burst size in metazoan cells.
BMC Mol Biol, 16:20.

Cellier, P, Charnois, T, Plantevit, M, Rigotti, C, Cremilleux, B, Gandrillon, O, Klema, J, and Manguin, J (2015).
Sequential pattern mining for discovering gene interactions and their contextual information from biomedical texts.
J Biomed Semantics, 6:27.

Chatagnon, A, Veber, P, Morin, V, Bedo, J, Triqueneaux, G, Semon, M, Laudet, V, d'Alche-Buc, F, and Benoit, G (2015).
RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements.
Nucleic Acids Res, 43(10):4833-54.

Crauste, F, Terry, E, Mercier, IL, Mafille, J, Djebali, S, Andrieu, T, Mercier, B, Kaneko, G, Arpin, C, Marvel, J, and Gandrillon, O (2015).
Predicting pathogen-specific CD8 T cell immune responses from a modeling approach.
J Theor Biol, 374:66-82.

Eymard, N, Bessonov, N, Gandrillon, O, Koury, MJ, and Volpert, V (2015).
The role of spatial organization of cells in erythropoiesis.
J Math Biol, 70(1-2):71-97.

Gely-Pernot, A, Raverdeau, M, Teletin, M, Vernet, N, Feret, B, Klopfenstein, M, Dennefeld, C, Davidson, I, Benoit, G, Mark, M, and Ghyselinck, NB (2015).
Retinoic Acid Receptors Control Spermatogonia Cell-Fate and Induce Expression of the SALL4A Transcription Factor.
PLoS Genet, 11(10):e1005501.

Corre, G, Stockholm, D, Arnaud, O, Kaneko, G, Vinuelas, J, Yamagata, Y, Neildez-Nguyen, TMA, Kupiec, J, Beslon, G, Gandrillon, O, and Paldi, A (2014).
Stochastic fluctuations and distributed control of gene expression impact cellular memory.
PLoS One, 9(12):e115574.

Nguyen-Lefebvre, AT, Leprun, G, Morin, V, Vinuelas, J, Coute, Y, Madjar, J, Gandrillon, O, and Gonin-Giraud, S (2014).
V-erbA generates ribosomes devoid of RPL11 and regulates translational activity in avian erythroid progenitors.
Oncogene, 33(12):1581-9.

Chatonnet, F, Guyot, R, Benoit, G, and Flamant, F (2013).
Genome-wide analysis of thyroid hormone receptors shared and specific functions in neural cells.
Proc Natl Acad Sci U S A, 110(8):E766-75.

Joly-Tonetti, N, Vinuelas, J, Gandrillon, O, and Lamartine, J (2013).
Differential miRNA expression profiles in proliferating or differentiated keratinocytes in response to gamma irradiation.
BMC Genomics, 14:184.

Vinuelas, J, Kaneko, G, Coulon, A, Vallin, E, Morin, V, Mejia-Pous, C, Kupiec, J, Beslon, G, and Gandrillon, O (2013).
Quantifying the contribution of chromatin dynamics to stochastic gene expression reveals long, locus-dependent periods between transcriptional bursts.
BMC Biol, 11:15.

Fischer, S, Kurbatova, P, Bessonov, N, Gandrillon, O, Volpert, V, and Crauste, F (2012).
Modeling erythroblastic islands: using a hybrid model to assess the function of central macrophage.
J Theor Biol, 298:92-106.

Gandrillon, O, Kolesnik-Antoine, D, Kupiec, J, and Beslon, G (2012).
Chance at the heart of the cell.
Prog Biophys Mol Biol, 110(1):1-4.

Moutier, E, Ye, T, Choukrallah, M, Urban, S, Osz, J, Chatagnon, A, Delacroix, L, Langer, D, Rochel, N, Moras, D, Benoit, G, and Davidson, I (2012).
Retinoic acid receptors recognize the mouse genome through binding elements with diverse spacing and topology.
J Biol Chem, 287(31):26328-41.

Raverdeau, M, Gely-Pernot, A, Feret, B, Dennefeld, C, Benoit, G, Davidson, I, Chambon, P, Mark, M, and Ghyselinck, NB (2012).
Retinoic acid induces Sertoli cell paracrine signals for spermatogonia differentiation but cell autonomously drives spermatocyte meiosis.
Proc Natl Acad Sci U S A, 109(41):16582-7.

Terry, E, Marvel, J, Arpin, C, Gandrillon, O, and Crauste, F (2012).
Mathematical model of the primary CD8 T cell immune response: stability analysis of a nonlinear age-structured system.
J Math Biol, 65(2):263-91.

Vinuelas, J, Kaneko, G, Coulon, A, Beslon, G, and Gandrillon, O (2012).
Towards experimental manipulation of stochasticity in gene expression.
Prog Biophys Mol Biol, 110(1):44-53.

Lalevee, S, Anno, YN, Chatagnon, A, Samarut, E, Poch, O, Laudet, V, Benoit, G, Lecompte, O, and Rochette-Egly, C (2011).
Genome-wide in silico identification of new conserved and functional retinoic acid receptor response elements (direct repeats separated by 5 bp).
J Biol Chem, 286(38):33322-34.

Mejia-Pous, C, Damiola, F, and Gandrillon, O (2011).
Cholesterol synthesis-related enzyme oxidosqualene cyclase is required to maintain self-renewal in primary erythroid progenitors.
Cell Prolif, 44(5):441-52.

Nguyen-Lefebvre, AT, Gonin-Giraud, S, Scherl, A, Arboit, P, Granger, L, Sanchez, J, Diaz, J, Gandrillon, O, and Madjar, J (2011).
Identification of human, rat and chicken ribosomal proteins by a combination of two-dimensional polyacrylamide gel electrophoresis and mass spectrometry.
J Proteomics, 74(2):167-85.

Royer, C, Briolay, J, Garel, A, Brouilly, P, Sasanuma, S, Sasanuma, M, Shimomura, M, Keime, C, Gandrillon, O, Huang, Y, Chavancy, G, Mita, K, and Couble, P (2011).
Novel genes differentially expressed between posterior and median silk gland identified by SAGE-aided transcriptome analysis.
Insect Biochem Mol Biol, 41(2):118-24.

Coulon, A, Gandrillon, O, and Beslon, G (2010).
On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter.
BMC Syst Biol, 4:2.

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