Différences
Ci-dessous, les différences entre deux révisions de la page.
| Les deux révisions précédentesRévision précédenteProchaine révision | Révision précédente | ||
| documentation:tools:software:r [2019/10/03 16:05] – [R 3.6.1] ltaulell | documentation:tools:software:r [2025/03/12 15:09] (Version actuelle) – supprimée ltaulell | ||
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| Ligne 1: | Ligne 1: | ||
| - | ====== R Statistical Computing ====== | ||
| - | |||
| - | ===== R 3.6.1 ===== | ||
| - | ^ Version | ||
| - | | 3.6.1 | GCC/ | ||
| - | | | **modulefile** : '' | ||
| - | |||
| - | < | ||
| - | ${SITE}=/ | ||
| - | </ | ||
| - | |||
| - | Pour utiliser les modules, consulter [[documentation: | ||
| - | |||
| - | === libraries === | ||
| - | <WRAP col3> | ||
| - | |||
| - | * igraph | ||
| - | * ade4 | ||
| - | * ggplot2 | ||
| - | * seqinr | ||
| - | * multitaper | ||
| - | * doMC | ||
| - | * iterators | ||
| - | * foreach | ||
| - | * XNomial | ||
| - | * data.table | ||
| - | * devtools | ||
| - | * ape | ||
| - | * phangorn | ||
| - | |||
| - | * __Bioconductor(3.9)__ | ||
| - | * DESeq | ||
| - | * xtable | ||
| - | * BiocGenerics | ||
| - | * bsseq | ||
| - | * glmnet | ||
| - | * DSS | ||
| - | * Biobase | ||
| - | * DESeq2 | ||
| - | * EBSeq | ||
| - | * goseq | ||
| - | * memoise | ||
| - | * BiSeq | ||
| - | * DEXSeq | ||
| - | * GenomicRange | ||
| - | * GenomicAlignments | ||
| - | * Repitools | ||
| - | * Rsubread | ||
| - | * ggbio | ||
| - | * AnnotationDbi | ||
| - | |||
| - | * __Git__ | ||
| - | * methylKit | ||
| - | * goldmine | ||
| - | * methylaction | ||
| - | * tailfindr | ||
| - | * Pasha | ||
| - | </ | ||
| - | |||
| - | |||
| - | ===== R 3.4.3 ===== | ||
| - | ^ Version | ||
| - | | 3.4.3 | GCC/ | ||
| - | | | **modulefile** : '' | ||
| - | |||
| - | < | ||
| - | ${SITE}=/ | ||
| - | </ | ||
| - | |||
| - | Pour utiliser les modules, consulter [[documentation: | ||
| - | |||
| - | === libraries === | ||
| - | <WRAP col3> | ||
| - | |||
| - | * igraph | ||
| - | * ade4 | ||
| - | * ggplot2 | ||
| - | * seqinr | ||
| - | * multitaper | ||
| - | * doMC | ||
| - | * iterators | ||
| - | * foreach | ||
| - | * XNomial | ||
| - | * data.table | ||
| - | * devtools | ||
| - | * phangorn | ||
| - | * ape | ||
| - | |||
| - | * __Git__ | ||
| - | * methylKit | ||
| - | * goldmine | ||
| - | * methylaction | ||
| - | |||
| - | * __Bioconductor(3.6)__ | ||
| - | * DESeq | ||
| - | * xtable | ||
| - | * BiocGenerics | ||
| - | * bsseq | ||
| - | * glmnet | ||
| - | * DSS | ||
| - | * Biobase | ||
| - | * DESeq2 | ||
| - | * EBSeq | ||
| - | * goseq | ||
| - | * memoise | ||
| - | * BiSeq | ||
| - | * DEXSeq | ||
| - | * GenomicRange | ||
| - | * GenomicAlignments | ||
| - | * Repitools | ||
| - | * Rsubread | ||
| - | * ggbio | ||
| - | * aod | ||
| - | |||
| - | </ | ||
| - | ===== R 3.2 ===== | ||
| - | |||
| - | ^ Version | ||
| - | | 3.2.4 | GCC/ | ||
| - | | | **modulefile** : '' | ||
| - | |||
| - | |||
| - | < | ||
| - | ${SITE}=/ | ||
| - | </ | ||
| - | |||
| - | Pour utiliser les modules, consulter [[documentation: | ||
| - | |||
| - | === libraries === | ||
| - | Les packages suivants (ainsi que leurs dépendances) sont installés : | ||
| - | <WRAP col3> | ||
| - | |||
| - | * igraph | ||
| - | * ade4 | ||
| - | * ggplot2 | ||
| - | * seqinr | ||
| - | * multitaper | ||
| - | * doMC | ||
| - | * iterators | ||
| - | * foreach | ||
| - | * XNomial | ||
| - | * data.table | ||
| - | * devtools | ||
| - | * phangorn | ||
| - | * ape | ||
| - | |||
| - | * __Git__ | ||
| - | * goldmine | ||
| - | * methylaction | ||
| - | |||
| - | * __Bioconductor(3.2)__ | ||
| - | * DESeq (1.22.1) | ||
| - | * xtable (1.8-2) | ||
| - | * BiocGenerics (0.16.1) | ||
| - | * bsseq (1.6.0) | ||
| - | * glmnet (2.0-13) | ||
| - | * DSS (2.10.0) | ||
| - | * Biobase (2.30.0) | ||
| - | * DESeq2 (1.10.1) | ||
| - | * EBSeq (1.10.0) | ||
| - | * memoise (1.1.0) | ||
| - | * DEXSeq (1.16.10) | ||
| - | * GenomicRanges (1.22.4) | ||
| - | * GenomicAlignments (1.6.3) | ||
| - | * Rsubread (1.20.6) | ||
| - | * ggbio (1.18.5) | ||
| - | * aod (1.3) | ||
| - | |||
| - | |||
| - | </ | ||
| - | |||
| - | |||
| - | ==== Refs & docs externes ==== | ||
| - | |||
| - | * http:// | ||