Ceci est une ancienne révision du document !
R Statistical Computing
R is a free software environment for statistical computing and graphics.
R 4.0
| Version | Compilateur | chemin d'accès | OS |
|---|---|---|---|
| 4.0.3 | GCC/8.2.0 | ${SITE}/Core/R/4.0.3/bin | Debian 9 |
modulefile : R/4.0.3 |
|||
${SITE}=/applis/PSMN/debian9/software
Pour utiliser les modules, consulter Environment Modules
libraries
Use library() and installed.packages() to list all installed packages (on users's requests).
R 3.6
| Version | Compilateur | chemin d'accès | OS |
|---|---|---|---|
| 3.6.1 | GCC/7.2.0 | ${SITE}/Core/R/3.6.1/bin | Debian 9 |
modulefile : R/3.6.1 |
|||
${SITE}=/applis/PSMN/debian9/software
Pour utiliser les modules, consulter Environment Modules
libraries
- igraph
- ade4
- ggplot2
- seqinr
- multitaper
- doMC
- iterators
- foreach
- XNomial
- data.table
- devtools
- ape
- phangorn
- Bioconductor(3.9)
- DESeq
- xtable
- BiocGenerics
- bsseq
- glmnet
- DSS
- Biobase
- DESeq2
- EBSeq
- goseq
- memoise
- BiSeq
- DEXSeq
- GenomicRange
- GenomicAlignments
- Repitools
- Rsubread
- ggbio
- AnnotationDbi
- scone
- rtracklayer
- Git
- methylKit
- goldmine
methylaction- tailfindr
- Pasha
R 3.4
| Version | Compilateur | chemin d'accès | OS |
|---|---|---|---|
| 3.4.3 | GCC/7.2.0 | ${SITE}/Core/R/3.4.3/bin | Debian 9 |
modulefile : R/3.4.3 |
|||
${SITE}=/applis/PSMN/debian9/software
Pour utiliser les modules, consulter Environment Modules
libraries
- igraph
- ade4
- ggplot2
- seqinr
- multitaper
- doMC
- iterators
- foreach
- XNomial
- data.table
- devtools
- phangorn
- ape
- Git
- methylKit
- goldmine
- methylaction
- Bioconductor(3.6)
- DESeq
- xtable
- BiocGenerics
- bsseq
- glmnet
- DSS
- Biobase
- DESeq2
- EBSeq
- goseq
- memoise
- BiSeq
- DEXSeq
- GenomicRange
- GenomicAlignments
- Repitools
- Rsubread
- ggbio
- aod
R 3.2
| Version | Compilateur | chemin d'accès | OS |
|---|---|---|---|
| 3.2.4 | GCC/7.2.0 | ${SITE}/Core/R/3.2.4/bin | Debian 9 |
modulefile : R/3.2.4 |
|||
${SITE}=/applis/PSMN/debian9/software
Pour utiliser les modules, consulter Environment Modules
libraries
Les packages suivants (ainsi que leurs dépendances) sont installés :
- igraph
- ade4
- ggplot2
- seqinr
- multitaper
- doMC
- iterators
- foreach
- XNomial
- data.table
- devtools
- phangorn
- ape
- Git
- goldmine
- methylaction
- Bioconductor(3.2)
- DESeq (1.22.1)
- xtable (1.8-2)
- BiocGenerics (0.16.1)
- bsseq (1.6.0)
- glmnet (2.0-13)
- DSS (2.10.0)
- Biobase (2.30.0)
- DESeq2 (1.10.1)
- EBSeq (1.10.0)
- memoise (1.1.0)
- DEXSeq (1.16.10)
- GenomicRanges (1.22.4)
- GenomicAlignments (1.6.3)
- Rsubread (1.20.6)
- ggbio (1.18.5)
- aod (1.3)