Ci-dessous, les différences entre deux révisions de la page.
Les deux révisions précédentesRévision précédenteProchaine révision | Révision précédenteDernière révisionLes deux révisions suivantes | ||
documentation:tools:langages:python:modules [2020/05/26 07:20] – ltaulell | documentation:tools:langages:python:modules [2021/09/09 13:43] – [Python 3.8.3] ltaulell | ||
---|---|---|---|
Ligne 4: | Ligne 4: | ||
< | < | ||
+ | <WRAP col3> | ||
+ | * adjustText | ||
+ | * alabaster | ||
+ | * anndata | ||
+ | * annoy | ||
+ | * appdirs | ||
+ | * asciitree | ||
+ | * astroid | ||
+ | * atomicwrites | ||
+ | * attrs | ||
+ | * autopep8 | ||
+ | * Babel 2.8.0 | ||
+ | * backcall | ||
+ | * beniget | ||
+ | * bigfloat | ||
+ | * biopython | ||
+ | * black | ||
+ | * bleach | ||
+ | * CacheControl | ||
+ | * certifi | ||
+ | * cffi 1.14.0 | ||
+ | * chardet | ||
+ | * chromosight | ||
+ | * click 7.1.2 | ||
+ | * cloudpickle | ||
+ | * ClusterShell | ||
+ | * cmake | ||
+ | * colorama | ||
+ | * coloredlogs | ||
+ | * colormath | ||
+ | * ConfigArgParse | ||
+ | * cooler | ||
+ | * cryptography | ||
+ | * cutadapt | ||
+ | * cycler | ||
+ | * Cython | ||
+ | * cytoolz | ||
+ | * datrie | ||
+ | * decorator | ||
+ | * defusedxml | ||
+ | * demuxEM | ||
+ | * DendroPy | ||
+ | * diff-match-patch | ||
+ | * dill 0.3.1.1 | ||
+ | * dnaio 0.4.2 | ||
+ | * docopt | ||
+ | * docutils | ||
+ | * drmaa 0.7.9 | ||
+ | * entrypoints | ||
+ | * ete3 3.1.1 | ||
+ | * execo 2.6.4 | ||
+ | * fabio | ||
+ | * fasteners | ||
+ | * fbpca 1.0 | ||
+ | * fitsne | ||
+ | * flake8 | ||
+ | * Flask 1.1.2 | ||
+ | * Flask-WTF | ||
+ | * forceatlas2-python | ||
+ | * freetype-py | ||
+ | * frozendict | ||
+ | * future | ||
+ | * gast 0.3.3 | ||
+ | * geosketch | ||
+ | * gitdb 4.0.5 | ||
+ | * GitPython | ||
+ | * gnureadline | ||
+ | * gprof2dot | ||
+ | * gprofiler-official | ||
+ | * graphviz | ||
+ | * h5py 2.10.0 | ||
+ | * harmony-pytorch | ||
+ | * hdf5plugin | ||
+ | * hdf5storage | ||
+ | * hdmedians | ||
+ | * helpdev | ||
+ | * hicstuff | ||
+ | * hnswlib | ||
+ | * HTSeq | ||
+ | * humanfriendly | ||
+ | * idna 2.9 | ||
+ | * imagecodecs | ||
+ | * imageio | ||
+ | * imagesize | ||
+ | * intel-openmp | ||
+ | * intervaltree | ||
+ | * invoke | ||
+ | * ipykernel | ||
+ | * ipython | ||
+ | * ipython-genutils | ||
+ | * isort | ||
+ | * itsdangerous | ||
+ | * jedi 0.15.2 | ||
+ | * jeepney | ||
+ | * Jinja2 | ||
+ | * JIT 0.0.1 | ||
+ | * joblib | ||
+ | * json5 0.9.5 | ||
+ | * jsonschema | ||
+ | * jupyter-client | ||
+ | * jupyter-console | ||
+ | * jupyter-core | ||
+ | * jupyterlab | ||
+ | * jupyterlab-server | ||
+ | * keyring | ||
+ | * kiwisolver | ||
+ | * lazy-object-proxy | ||
+ | * leidenalg | ||
+ | * lightgbm | ||
+ | * llvmlite | ||
+ | * lockfile | ||
+ | * loguru | ||
+ | * loompy | ||
+ | * louvain | ||
+ | * lxml 4.5.1 | ||
+ | * lzstring | ||
+ | * Mako 1.1.2 | ||
+ | * Markdown | ||
+ | * MarkupSafe | ||
+ | * matplotlib | ||
+ | * mccabe | ||
+ | * Mikado | ||
+ | * mistune | ||
+ | * mkl | ||
+ | * more-itertools | ||
+ | * mpi4py | ||
+ | * mpmath | ||
+ | * msgpack | ||
+ | * multiprocess | ||
+ | * multiqc | ||
+ | * mysql-connector | ||
+ | * natsort | ||
+ | * nbconvert | ||
+ | * nbformat | ||
+ | * ndim 0.1.4 | ||
+ | * networkx | ||
+ | * nose 1.3.7 | ||
+ | * notebook | ||
+ | * numba | ||
+ | * numcodecs | ||
+ | * numpy | ||
+ | * numpy-groupies | ||
+ | * numpydoc | ||
+ | * opencv-contrib-python | ||
+ | * orthopy | ||
+ | * packaging | ||
+ | * pandas | ||
+ | * pandocfilters | ||
+ | * parso 0.5.2 | ||
+ | * pathos | ||
+ | * pathspec | ||
+ | * pathtools | ||
+ | * patsy 0.5.1 | ||
+ | * pegasusio | ||
+ | * pegasuspy | ||
+ | * pexpect | ||
+ | * pickleshare | ||
+ | * Pillow | ||
+ | * pip | ||
+ | * pkgconfig | ||
+ | * plotly | ||
+ | * pluggy | ||
+ | * ply 3.11 | ||
+ | * pox 0.2.7 | ||
+ | * ppft 1.6.6.1 | ||
+ | * prometheus-client | ||
+ | * prompt-toolkit | ||
+ | * protobuf | ||
+ | * psrecord | ||
+ | * psutil | ||
+ | * psycopg2 | ||
+ | * ptyprocess | ||
+ | * py 1.8.1 | ||
+ | * pyarrow | ||
+ | * pybedtools | ||
+ | * pyBigWig | ||
+ | * pybind11 | ||
+ | * pycodestyle | ||
+ | * pycparser | ||
+ | * pydocstyle | ||
+ | * pyfaidx | ||
+ | * pyfasta | ||
+ | * pyfastx | ||
+ | * pyflakes | ||
+ | * Pygments | ||
+ | * pylint | ||
+ | * pynndescent | ||
+ | * PyOpenGL | ||
+ | * pypairix | ||
+ | * pyparsing | ||
+ | * PyQt5 | ||
+ | * PyQt5-sip | ||
+ | * pyqtgraph | ||
+ | * PyQtWebEngine | ||
+ | * pyrsistent | ||
+ | * pysam | ||
+ | * pytest | ||
+ | * python-dateutil | ||
+ | * python-igraph | ||
+ | * python-jsonrpc-server | ||
+ | * python-language-server | ||
+ | * python-magic | ||
+ | * python-pptx | ||
+ | * pythran | ||
+ | * pytz 2020.1 | ||
+ | * PyVTK | ||
+ | * PyWavelets | ||
+ | * pyxdg 0.26 | ||
+ | * PyYAML | ||
+ | * pyzmq | ||
+ | * QDarkStyle | ||
+ | * QtAwesome | ||
+ | * qtconsole | ||
+ | * QtPy 1.9.0 | ||
+ | * quadpy | ||
+ | * ratelimiter | ||
+ | * rebound | ||
+ | * regex | ||
+ | * requests | ||
+ | * restructuredtext-lint | ||
+ | * retrying | ||
+ | * rope 0.17.0 | ||
+ | * rpy2 3.3.3 | ||
+ | * ruamel.yaml | ||
+ | * ruamel.yaml.clib | ||
+ | * scanorama | ||
+ | * scikit-bio | ||
+ | * scikit-image | ||
+ | * scikit-learn | ||
+ | * scikit-misc | ||
+ | * scipy 1.4.1 | ||
+ | * seaborn | ||
+ | * SecretStorage | ||
+ | * Send2Trash | ||
+ | * serpentine | ||
+ | * setuptools | ||
+ | * silx 0.12.0 | ||
+ | * simplejson | ||
+ | * six | ||
+ | * sklearn | ||
+ | * smmap 3.0.4 | ||
+ | * snakemake | ||
+ | * snowballstemmer | ||
+ | * sortedcontainers | ||
+ | * spectra | ||
+ | * Sphinx | ||
+ | * sphinxcontrib-applehelp | ||
+ | * sphinxcontrib-devhelp | ||
+ | * sphinxcontrib-htmlhelp | ||
+ | * sphinxcontrib-jsmath | ||
+ | * sphinxcontrib-qthelp | ||
+ | * sphinxcontrib-serializinghtml 1.1.4 | ||
+ | * spyder | ||
+ | * spyder-kernels | ||
+ | * SQLAlchemy | ||
+ | * SQLAlchemy-Utils | ||
+ | * statsmodels | ||
+ | * sympy 1.6 | ||
+ | * tabulate | ||
+ | * tbb | ||
+ | * terminado | ||
+ | * testpath | ||
+ | * texttable | ||
+ | * threadpoolctl | ||
+ | * tifffile | ||
+ | * tinycov | ||
+ | * toml 0.10.1 | ||
+ | * toolz | ||
+ | * toposort | ||
+ | * torch 1.7.1 | ||
+ | * tornado | ||
+ | * tqdm 4.47.0 | ||
+ | * traitlets | ||
+ | * typed-ast | ||
+ | * typing-extensions | ||
+ | * tzlocal | ||
+ | * ujson 1.35 | ||
+ | * umap-learn | ||
+ | * urllib3 | ||
+ | * vext 0.7.3 | ||
+ | * vext.wx | ||
+ | * vispy 0.6.4 | ||
+ | * watchdog | ||
+ | * wcwidth | ||
+ | * webencodings | ||
+ | * Werkzeug | ||
+ | * wheel | ||
+ | * wrapt | ||
+ | * WTForms | ||
+ | * wurlitzer | ||
+ | * xlrd 2.0.1 | ||
+ | * XlsxWriter | ||
+ | * xopen 0.8.4 | ||
+ | * yapf 0.30.0 | ||
+ | * zarr 2.6.1 | ||
+ | * zipfile2 | ||
+ | |||
+ | </ | ||
===== Python 3.6.1 ===== | ===== Python 3.6.1 ===== | ||
Ligne 9: | Ligne 307: | ||
<WRAP col3> | <WRAP col3> | ||
+ | * alabaster | ||
* altgraph | * altgraph | ||
* appdirs | * appdirs | ||
Ligne 19: | Ligne 318: | ||
* beniget | * beniget | ||
* bigfloat | * bigfloat | ||
- | * biopython | + | * biopython |
* bitarray | * bitarray | ||
* bitstring | * bitstring | ||
Ligne 25: | Ligne 324: | ||
* blist 1.3.6 | * blist 1.3.6 | ||
* bx-python | * bx-python | ||
- | * certifi | + | * certifi |
* cffi | * cffi | ||
* chardet | * chardet | ||
* click 6.7 | * click 6.7 | ||
* clint 0.5.1 | * clint 0.5.1 | ||
+ | * cmake 3.17.3 | ||
* coloredlogs | * coloredlogs | ||
* colorlog | * colorlog | ||
Ligne 41: | Ligne 341: | ||
* datrie | * datrie | ||
* deap 1.0.2 | * deap 1.0.2 | ||
- | * decorator | + | * decorator |
* deepdiff | * deepdiff | ||
* DendroPy | * DendroPy | ||
Ligne 71: | Ligne 371: | ||
* humanfriendly | * humanfriendly | ||
* idna 2.6 | * idna 2.6 | ||
+ | * imageio | ||
* importlib | * importlib | ||
+ | * importlib-metadata | ||
* intervaltree | * intervaltree | ||
* intervaltree-bio | * intervaltree-bio | ||
Ligne 81: | Ligne 383: | ||
* jedi | * jedi | ||
* Jinja2 | * Jinja2 | ||
+ | * JIT 0.0.1 | ||
* joblib | * joblib | ||
* jsonpickle | * jsonpickle | ||
- | * jsonschema | + | |
+ | | ||
* jupyter | * jupyter | ||
* jupyter-client | * jupyter-client | ||
Ligne 90: | Ligne 394: | ||
* kiwisolver | * kiwisolver | ||
* liac-arff | * liac-arff | ||
- | * llvmlite | + | * llvmlite |
* lxml 4.2.5 | * lxml 4.2.5 | ||
* lzstring | * lzstring | ||
Ligne 97: | Ligne 401: | ||
* Markdown | * Markdown | ||
* MarkupSafe | * MarkupSafe | ||
- | * matplotlib | + | * matplotlib |
* Mikado | * Mikado | ||
* mistune | * mistune | ||
* mock 2.0.0 | * mock 2.0.0 | ||
- | * mpi4py | + | * mpi4py |
* mpmath | * mpmath | ||
+ | * msgpack | ||
* multiprocess | * multiprocess | ||
- | * multiqc | + | * multiqc |
* mysql-connector | * mysql-connector | ||
* nbconvert | * nbconvert | ||
* nbformat | * nbformat | ||
+ | * ndim 0.1.4 | ||
* netaddr | * netaddr | ||
* netifaces | * netifaces | ||
- | * networkx | + | |
+ | | ||
* nose 1.3.7 | * nose 1.3.7 | ||
* notebook | * notebook | ||
- | * numba 0.49.1 | + | * numba 0.50.1 |
* numexpr | * numexpr | ||
* numpy 1.19.0rc1 | * numpy 1.19.0rc1 | ||
* numpy-groupies | * numpy-groupies | ||
+ | * orthopy | ||
* pandas | * pandas | ||
* pandocfilters | * pandocfilters | ||
Ligne 127: | Ligne 435: | ||
* pexpect | * pexpect | ||
* pickleshare | * pickleshare | ||
- | * Pillow | + | * Pillow |
- | * pip 20.2b1 | + | * pip 20.2.2 |
* pkgconfig | * pkgconfig | ||
+ | * plotly | ||
* pluggy | * pluggy | ||
* ply 3.11 | * ply 3.11 | ||
Ligne 141: | Ligne 450: | ||
* pyasn1 | * pyasn1 | ||
* pybedtools | * pybedtools | ||
+ | * pyBigWig | ||
* pycosat | * pycosat | ||
* pycparser | * pycparser | ||
* pycrypto | * pycrypto | ||
- | * pyDNase | ||
* pyfaidx | * pyfaidx | ||
* pyfasta | * pyfasta | ||
Ligne 153: | Ligne 462: | ||
* pyparsing | * pyparsing | ||
* PyQt5 5.10.1 | * PyQt5 5.10.1 | ||
- | * pysam 0.13 | + | |
+ | | ||
* pytest | * pytest | ||
* python-dateutil | * python-dateutil | ||
Ligne 159: | Ligne 469: | ||
* python-magic | * python-magic | ||
* python-pptx | * python-pptx | ||
+ | * python-rapidjson | ||
* pythran | * pythran | ||
* pytools | * pytools | ||
* pytz | * pytz | ||
* PyVTK 0.5.18 | * PyVTK 0.5.18 | ||
+ | * PyWavelets | ||
* PyYAML | * PyYAML | ||
* pyzmq 17.0.0b3 | * pyzmq 17.0.0b3 | ||
* qtconsole | * qtconsole | ||
* QtPy 1.4.0 | * QtPy 1.4.0 | ||
+ | * quadpy | ||
* quast 4.6.3 | * quast 4.6.3 | ||
* ratelimiter | * ratelimiter | ||
* requests | * requests | ||
* restructuredtext-lint | * restructuredtext-lint | ||
+ | * retrying | ||
* rpy2 3.0.1 | * rpy2 3.0.1 | ||
* rpy2-bioconductor-extensions 0.2.5.dev0 | * rpy2-bioconductor-extensions 0.2.5.dev0 | ||
* ruamel.yaml | * ruamel.yaml | ||
- | * scikit-image | + | * scikit-image |
* scikit-learn | * scikit-learn | ||
* scipy 1.4.1 | * scipy 1.4.1 | ||
Ligne 190: | Ligne 504: | ||
* sortedcontainers | * sortedcontainers | ||
* spectra | * spectra | ||
- | * SQLAlchemy | + | * SQLAlchemy |
* SQLAlchemy-Utils | * SQLAlchemy-Utils | ||
* sympy 1.1.1 | * sympy 1.1.1 | ||
Ligne 197: | Ligne 511: | ||
* terminado | * terminado | ||
* testpath | * testpath | ||
+ | * tifffile | ||
* toml | * toml | ||
* tomlkit | * tomlkit | ||
Ligne 220: | Ligne 535: | ||
* xopen 0.3.2 | * xopen 0.3.2 | ||
* zipfile2 | * zipfile2 | ||
+ | * zipp 3.1.0 | ||
</ | </ | ||