Différences
Ci-dessous, les différences entre deux révisions de la page.
| Les deux révisions précédentesRévision précédenteProchaine révision | Révision précédenteDernière révisionLes deux révisions suivantes | ||
| documentation:tools:langages:python:modules [2020/06/22 15:54] – [Python 3.8.3] update modules list ltaulell | documentation:tools:langages:python:modules [2021/09/09 13:43] – [Python 3.8.3] ltaulell | ||
|---|---|---|---|
| Ligne 5: | Ligne 5: | ||
| <WRAP col3> | <WRAP col3> | ||
| + | * adjustText | ||
| * alabaster | * alabaster | ||
| + | * anndata | ||
| + | * annoy | ||
| * appdirs | * appdirs | ||
| + | * asciitree | ||
| * astroid | * astroid | ||
| * atomicwrites | * atomicwrites | ||
| Ligne 19: | Ligne 23: | ||
| * bleach | * bleach | ||
| * CacheControl | * CacheControl | ||
| - | * certifi | + | * certifi |
| * cffi 1.14.0 | * cffi 1.14.0 | ||
| * chardet | * chardet | ||
| + | * chromosight | ||
| * click 7.1.2 | * click 7.1.2 | ||
| * cloudpickle | * cloudpickle | ||
| * ClusterShell | * ClusterShell | ||
| + | * cmake | ||
| + | * colorama | ||
| * coloredlogs | * coloredlogs | ||
| * colormath | * colormath | ||
| * ConfigArgParse | * ConfigArgParse | ||
| + | * cooler | ||
| * cryptography | * cryptography | ||
| * cutadapt | * cutadapt | ||
| * cycler | * cycler | ||
| * Cython | * Cython | ||
| + | * cytoolz | ||
| * datrie | * datrie | ||
| * decorator | * decorator | ||
| * defusedxml | * defusedxml | ||
| + | * demuxEM | ||
| * DendroPy | * DendroPy | ||
| * diff-match-patch | * diff-match-patch | ||
| * dill 0.3.1.1 | * dill 0.3.1.1 | ||
| * dnaio 0.4.2 | * dnaio 0.4.2 | ||
| + | * docopt | ||
| * docutils | * docutils | ||
| * drmaa 0.7.9 | * drmaa 0.7.9 | ||
| Ligne 45: | Ligne 56: | ||
| * execo 2.6.4 | * execo 2.6.4 | ||
| * fabio | * fabio | ||
| + | * fasteners | ||
| + | * fbpca 1.0 | ||
| + | * fitsne | ||
| * flake8 | * flake8 | ||
| + | * Flask 1.1.2 | ||
| + | * Flask-WTF | ||
| + | * forceatlas2-python | ||
| * freetype-py | * freetype-py | ||
| * frozendict | * frozendict | ||
| * future | * future | ||
| * gast 0.3.3 | * gast 0.3.3 | ||
| + | * geosketch | ||
| * gitdb 4.0.5 | * gitdb 4.0.5 | ||
| * GitPython | * GitPython | ||
| * gnureadline | * gnureadline | ||
| * gprof2dot | * gprof2dot | ||
| + | * gprofiler-official | ||
| * graphviz | * graphviz | ||
| * h5py 2.10.0 | * h5py 2.10.0 | ||
| + | * harmony-pytorch | ||
| * hdf5plugin | * hdf5plugin | ||
| * hdf5storage | * hdf5storage | ||
| * hdmedians | * hdmedians | ||
| * helpdev | * helpdev | ||
| + | * hicstuff | ||
| + | * hnswlib | ||
| * HTSeq | * HTSeq | ||
| * humanfriendly | * humanfriendly | ||
| Ligne 66: | Ligne 88: | ||
| * imageio | * imageio | ||
| * imagesize | * imagesize | ||
| - | * intervaltree | + | * intel-openmp |
| + | * intervaltree | ||
| * invoke | * invoke | ||
| * ipykernel | * ipykernel | ||
| Ligne 72: | Ligne 95: | ||
| * ipython-genutils | * ipython-genutils | ||
| * isort | * isort | ||
| + | * itsdangerous | ||
| * jedi 0.15.2 | * jedi 0.15.2 | ||
| * jeepney | * jeepney | ||
| * Jinja2 | * Jinja2 | ||
| + | * JIT 0.0.1 | ||
| * joblib | * joblib | ||
| * json5 0.9.5 | * json5 0.9.5 | ||
| Ligne 86: | Ligne 111: | ||
| * kiwisolver | * kiwisolver | ||
| * lazy-object-proxy | * lazy-object-proxy | ||
| - | * llvmlite | + | |
| + | * lightgbm | ||
| + | | ||
| * lockfile | * lockfile | ||
| * loguru | * loguru | ||
| + | * loompy | ||
| + | * louvain | ||
| * lxml 4.5.1 | * lxml 4.5.1 | ||
| * lzstring | * lzstring | ||
| Ligne 94: | Ligne 123: | ||
| * Markdown | * Markdown | ||
| * MarkupSafe | * MarkupSafe | ||
| - | * matplotlib | + | * matplotlib |
| * mccabe | * mccabe | ||
| * Mikado | * Mikado | ||
| * mistune | * mistune | ||
| + | * mkl | ||
| * more-itertools | * more-itertools | ||
| + | * mpi4py | ||
| * mpmath | * mpmath | ||
| * msgpack | * msgpack | ||
| * multiprocess | * multiprocess | ||
| - | * multiqc | + | * multiqc |
| * mysql-connector | * mysql-connector | ||
| * natsort | * natsort | ||
| * nbconvert | * nbconvert | ||
| * nbformat | * nbformat | ||
| + | * ndim 0.1.4 | ||
| * networkx | * networkx | ||
| * nose 1.3.7 | * nose 1.3.7 | ||
| * notebook | * notebook | ||
| - | * numba 0.49.1 | + | * numba 0.54.0 |
| + | * numcodecs | ||
| * numpy | * numpy | ||
| * numpy-groupies | * numpy-groupies | ||
| * numpydoc | * numpydoc | ||
| * opencv-contrib-python | * opencv-contrib-python | ||
| + | * orthopy | ||
| * packaging | * packaging | ||
| * pandas | * pandas | ||
| Ligne 123: | Ligne 157: | ||
| * pathtools | * pathtools | ||
| * patsy 0.5.1 | * patsy 0.5.1 | ||
| + | * pegasusio | ||
| + | * pegasuspy | ||
| * pexpect | * pexpect | ||
| * pickleshare | * pickleshare | ||
| * Pillow | * Pillow | ||
| - | * pip 20.1.1 | + | * pip 21.2.4 |
| * pkgconfig | * pkgconfig | ||
| * plotly | * plotly | ||
| Ligne 136: | Ligne 172: | ||
| * prompt-toolkit | * prompt-toolkit | ||
| * protobuf | * protobuf | ||
| + | * psrecord | ||
| * psutil | * psutil | ||
| + | * psycopg2 | ||
| * ptyprocess | * ptyprocess | ||
| * py 1.8.1 | * py 1.8.1 | ||
| + | * pyarrow | ||
| * pybedtools | * pybedtools | ||
| * pyBigWig | * pyBigWig | ||
| + | * pybind11 | ||
| * pycodestyle | * pycodestyle | ||
| * pycparser | * pycparser | ||
| Ligne 146: | Ligne 186: | ||
| * pyfaidx | * pyfaidx | ||
| * pyfasta | * pyfasta | ||
| + | * pyfastx | ||
| * pyflakes | * pyflakes | ||
| * Pygments | * Pygments | ||
| * pylint | * pylint | ||
| + | * pynndescent | ||
| * PyOpenGL | * PyOpenGL | ||
| + | * pypairix | ||
| * pyparsing | * pyparsing | ||
| * PyQt5 | * PyQt5 | ||
| Ligne 159: | Ligne 202: | ||
| * pytest | * pytest | ||
| * python-dateutil | * python-dateutil | ||
| + | * python-igraph | ||
| * python-jsonrpc-server | * python-jsonrpc-server | ||
| * python-language-server | * python-language-server | ||
| Ligne 174: | Ligne 218: | ||
| * qtconsole | * qtconsole | ||
| * QtPy 1.9.0 | * QtPy 1.9.0 | ||
| + | * quadpy | ||
| * ratelimiter | * ratelimiter | ||
| + | * rebound | ||
| * regex | * regex | ||
| * requests | * requests | ||
| Ligne 183: | Ligne 229: | ||
| * ruamel.yaml | * ruamel.yaml | ||
| * ruamel.yaml.clib | * ruamel.yaml.clib | ||
| + | * scanorama | ||
| * scikit-bio | * scikit-bio | ||
| * scikit-image | * scikit-image | ||
| - | * scikit-learn | + | * scikit-learn |
| + | * scikit-misc | ||
| * scipy 1.4.1 | * scipy 1.4.1 | ||
| * seaborn | * seaborn | ||
| * SecretStorage | * SecretStorage | ||
| * Send2Trash | * Send2Trash | ||
| + | * serpentine | ||
| * setuptools | * setuptools | ||
| * silx 0.12.0 | * silx 0.12.0 | ||
| * simplejson | * simplejson | ||
| * six | * six | ||
| + | * sklearn | ||
| * smmap 3.0.4 | * smmap 3.0.4 | ||
| * snakemake | * snakemake | ||
| Ligne 213: | Ligne 263: | ||
| * sympy 1.6 | * sympy 1.6 | ||
| * tabulate | * tabulate | ||
| + | * tbb | ||
| * terminado | * terminado | ||
| * testpath | * testpath | ||
| + | * texttable | ||
| * threadpoolctl | * threadpoolctl | ||
| * tifffile | * tifffile | ||
| + | * tinycov | ||
| * toml 0.10.1 | * toml 0.10.1 | ||
| + | * toolz | ||
| * toposort | * toposort | ||
| + | * torch 1.7.1 | ||
| * tornado | * tornado | ||
| + | * tqdm 4.47.0 | ||
| * traitlets | * traitlets | ||
| * typed-ast | * typed-ast | ||
| + | * typing-extensions | ||
| * tzlocal | * tzlocal | ||
| * ujson 1.35 | * ujson 1.35 | ||
| + | * umap-learn | ||
| * urllib3 | * urllib3 | ||
| * vext 0.7.3 | * vext 0.7.3 | ||
| Ligne 231: | Ligne 289: | ||
| * wcwidth | * wcwidth | ||
| * webencodings | * webencodings | ||
| + | * Werkzeug | ||
| * wheel | * wheel | ||
| * wrapt | * wrapt | ||
| + | * WTForms | ||
| * wurlitzer | * wurlitzer | ||
| + | * xlrd 2.0.1 | ||
| * XlsxWriter | * XlsxWriter | ||
| * xopen 0.8.4 | * xopen 0.8.4 | ||
| * yapf 0.30.0 | * yapf 0.30.0 | ||
| + | * zarr 2.6.1 | ||
| * zipfile2 | * zipfile2 | ||
| Ligne 256: | Ligne 318: | ||
| * beniget | * beniget | ||
| * bigfloat | * bigfloat | ||
| - | * biopython | + | * biopython |
| * bitarray | * bitarray | ||
| * bitstring | * bitstring | ||
| Ligne 262: | Ligne 324: | ||
| * blist 1.3.6 | * blist 1.3.6 | ||
| * bx-python | * bx-python | ||
| - | * certifi | + | * certifi |
| * cffi | * cffi | ||
| * chardet | * chardet | ||
| * click 6.7 | * click 6.7 | ||
| * clint 0.5.1 | * clint 0.5.1 | ||
| + | * cmake 3.17.3 | ||
| * coloredlogs | * coloredlogs | ||
| * colorlog | * colorlog | ||
| Ligne 278: | Ligne 341: | ||
| * datrie | * datrie | ||
| * deap 1.0.2 | * deap 1.0.2 | ||
| - | * decorator | + | * decorator |
| * deepdiff | * deepdiff | ||
| * DendroPy | * DendroPy | ||
| Ligne 308: | Ligne 371: | ||
| * humanfriendly | * humanfriendly | ||
| * idna 2.6 | * idna 2.6 | ||
| + | * imageio | ||
| * importlib | * importlib | ||
| + | * importlib-metadata | ||
| * intervaltree | * intervaltree | ||
| * intervaltree-bio | * intervaltree-bio | ||
| Ligne 318: | Ligne 383: | ||
| * jedi | * jedi | ||
| * Jinja2 | * Jinja2 | ||
| + | * JIT 0.0.1 | ||
| * joblib | * joblib | ||
| * jsonpickle | * jsonpickle | ||
| - | * jsonschema | + | |
| + | | ||
| * jupyter | * jupyter | ||
| * jupyter-client | * jupyter-client | ||
| Ligne 327: | Ligne 394: | ||
| * kiwisolver | * kiwisolver | ||
| * liac-arff | * liac-arff | ||
| - | * llvmlite | + | * llvmlite |
| * lxml 4.2.5 | * lxml 4.2.5 | ||
| * lzstring | * lzstring | ||
| Ligne 334: | Ligne 401: | ||
| * Markdown | * Markdown | ||
| * MarkupSafe | * MarkupSafe | ||
| - | * matplotlib | + | * matplotlib |
| * Mikado | * Mikado | ||
| * mistune | * mistune | ||
| * mock 2.0.0 | * mock 2.0.0 | ||
| - | * mpi4py | + | * mpi4py |
| * mpmath | * mpmath | ||
| + | * msgpack | ||
| * multiprocess | * multiprocess | ||
| - | * multiqc | + | * multiqc |
| * mysql-connector | * mysql-connector | ||
| * nbconvert | * nbconvert | ||
| * nbformat | * nbformat | ||
| + | * ndim 0.1.4 | ||
| * netaddr | * netaddr | ||
| * netifaces | * netifaces | ||
| - | * networkx | + | |
| + | | ||
| * nose 1.3.7 | * nose 1.3.7 | ||
| * notebook | * notebook | ||
| - | * numba 0.49.1 | + | * numba 0.50.1 |
| * numexpr | * numexpr | ||
| * numpy 1.19.0rc1 | * numpy 1.19.0rc1 | ||
| * numpy-groupies | * numpy-groupies | ||
| + | * orthopy | ||
| * pandas | * pandas | ||
| * pandocfilters | * pandocfilters | ||
| Ligne 364: | Ligne 435: | ||
| * pexpect | * pexpect | ||
| * pickleshare | * pickleshare | ||
| - | * Pillow | + | * Pillow |
| - | * pip 20.2b1 | + | * pip 20.2.2 |
| * pkgconfig | * pkgconfig | ||
| * plotly | * plotly | ||
| Ligne 383: | Ligne 454: | ||
| * pycparser | * pycparser | ||
| * pycrypto | * pycrypto | ||
| - | * pyDNase | ||
| * pyfaidx | * pyfaidx | ||
| * pyfasta | * pyfasta | ||
| Ligne 392: | Ligne 462: | ||
| * pyparsing | * pyparsing | ||
| * PyQt5 5.10.1 | * PyQt5 5.10.1 | ||
| - | * pysam 0.13 | + | |
| + | | ||
| * pytest | * pytest | ||
| * python-dateutil | * python-dateutil | ||
| Ligne 398: | Ligne 469: | ||
| * python-magic | * python-magic | ||
| * python-pptx | * python-pptx | ||
| + | * python-rapidjson | ||
| * pythran | * pythran | ||
| * pytools | * pytools | ||
| * pytz | * pytz | ||
| * PyVTK 0.5.18 | * PyVTK 0.5.18 | ||
| + | * PyWavelets | ||
| * PyYAML | * PyYAML | ||
| * pyzmq 17.0.0b3 | * pyzmq 17.0.0b3 | ||
| * qtconsole | * qtconsole | ||
| * QtPy 1.4.0 | * QtPy 1.4.0 | ||
| + | * quadpy | ||
| * quast 4.6.3 | * quast 4.6.3 | ||
| * ratelimiter | * ratelimiter | ||
| Ligne 414: | Ligne 488: | ||
| * rpy2-bioconductor-extensions 0.2.5.dev0 | * rpy2-bioconductor-extensions 0.2.5.dev0 | ||
| * ruamel.yaml | * ruamel.yaml | ||
| - | * scikit-image | + | * scikit-image |
| * scikit-learn | * scikit-learn | ||
| * scipy 1.4.1 | * scipy 1.4.1 | ||
| Ligne 430: | Ligne 504: | ||
| * sortedcontainers | * sortedcontainers | ||
| * spectra | * spectra | ||
| - | * SQLAlchemy | + | * SQLAlchemy |
| * SQLAlchemy-Utils | * SQLAlchemy-Utils | ||
| * sympy 1.1.1 | * sympy 1.1.1 | ||
| Ligne 437: | Ligne 511: | ||
| * terminado | * terminado | ||
| * testpath | * testpath | ||
| + | * tifffile | ||
| * toml | * toml | ||
| * tomlkit | * tomlkit | ||
| Ligne 460: | Ligne 535: | ||
| * xopen 0.3.2 | * xopen 0.3.2 | ||
| * zipfile2 | * zipfile2 | ||
| + | * zipp 3.1.0 | ||
| </ | </ | ||