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documentation:tools:langages:python:modules [2020/09/03 14:21] – [Python 3.6.1] ltaulell | documentation:tools:langages:python:modules [2021/09/09 13:43] – [Python 3.8.3] ltaulell | ||
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Ligne 5: | Ligne 5: | ||
<WRAP col3> | <WRAP col3> | ||
+ | * adjustText | ||
* alabaster | * alabaster | ||
+ | * anndata | ||
+ | * annoy | ||
* appdirs | * appdirs | ||
+ | * asciitree | ||
* astroid | * astroid | ||
* atomicwrites | * atomicwrites | ||
Ligne 19: | Ligne 23: | ||
* bleach | * bleach | ||
* CacheControl | * CacheControl | ||
- | * certifi | + | * certifi |
* cffi 1.14.0 | * cffi 1.14.0 | ||
* chardet | * chardet | ||
+ | * chromosight | ||
* click 7.1.2 | * click 7.1.2 | ||
* cloudpickle | * cloudpickle | ||
* ClusterShell | * ClusterShell | ||
* cmake | * cmake | ||
+ | * colorama | ||
* coloredlogs | * coloredlogs | ||
* colormath | * colormath | ||
* ConfigArgParse | * ConfigArgParse | ||
+ | * cooler | ||
* cryptography | * cryptography | ||
* cutadapt | * cutadapt | ||
* cycler | * cycler | ||
* Cython | * Cython | ||
+ | * cytoolz | ||
* datrie | * datrie | ||
* decorator | * decorator | ||
* defusedxml | * defusedxml | ||
+ | * demuxEM | ||
* DendroPy | * DendroPy | ||
* diff-match-patch | * diff-match-patch | ||
* dill 0.3.1.1 | * dill 0.3.1.1 | ||
* dnaio 0.4.2 | * dnaio 0.4.2 | ||
+ | * docopt | ||
* docutils | * docutils | ||
* drmaa 0.7.9 | * drmaa 0.7.9 | ||
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* execo 2.6.4 | * execo 2.6.4 | ||
* fabio | * fabio | ||
+ | * fasteners | ||
+ | * fbpca 1.0 | ||
+ | * fitsne | ||
* flake8 | * flake8 | ||
+ | * Flask 1.1.2 | ||
+ | * Flask-WTF | ||
+ | * forceatlas2-python | ||
* freetype-py | * freetype-py | ||
* frozendict | * frozendict | ||
* future | * future | ||
* gast 0.3.3 | * gast 0.3.3 | ||
+ | * geosketch | ||
* gitdb 4.0.5 | * gitdb 4.0.5 | ||
* GitPython | * GitPython | ||
* gnureadline | * gnureadline | ||
* gprof2dot | * gprof2dot | ||
+ | * gprofiler-official | ||
* graphviz | * graphviz | ||
* h5py 2.10.0 | * h5py 2.10.0 | ||
+ | * harmony-pytorch | ||
* hdf5plugin | * hdf5plugin | ||
* hdf5storage | * hdf5storage | ||
* hdmedians | * hdmedians | ||
* helpdev | * helpdev | ||
+ | * hicstuff | ||
+ | * hnswlib | ||
* HTSeq | * HTSeq | ||
* humanfriendly | * humanfriendly | ||
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* imageio | * imageio | ||
* imagesize | * imagesize | ||
- | * intervaltree | + | * intel-openmp |
+ | * intervaltree | ||
* invoke | * invoke | ||
* ipykernel | * ipykernel | ||
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* ipython-genutils | * ipython-genutils | ||
* isort | * isort | ||
+ | * itsdangerous | ||
* jedi 0.15.2 | * jedi 0.15.2 | ||
* jeepney | * jeepney | ||
Ligne 88: | Ligne 111: | ||
* kiwisolver | * kiwisolver | ||
* lazy-object-proxy | * lazy-object-proxy | ||
- | * llvmlite | + | |
+ | * lightgbm | ||
+ | | ||
* lockfile | * lockfile | ||
* loguru | * loguru | ||
+ | * loompy | ||
+ | * louvain | ||
* lxml 4.5.1 | * lxml 4.5.1 | ||
* lzstring | * lzstring | ||
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* Markdown | * Markdown | ||
* MarkupSafe | * MarkupSafe | ||
- | * matplotlib | + | * matplotlib |
* mccabe | * mccabe | ||
* Mikado | * Mikado | ||
* mistune | * mistune | ||
+ | * mkl | ||
* more-itertools | * more-itertools | ||
* mpi4py | * mpi4py | ||
Ligne 105: | Ligne 133: | ||
* msgpack | * msgpack | ||
* multiprocess | * multiprocess | ||
- | * multiqc | + | * multiqc |
* mysql-connector | * mysql-connector | ||
* natsort | * natsort | ||
Ligne 114: | Ligne 142: | ||
* nose 1.3.7 | * nose 1.3.7 | ||
* notebook | * notebook | ||
- | * numba 0.50.1 | + | * numba 0.54.0 |
+ | * numcodecs | ||
* numpy | * numpy | ||
* numpy-groupies | * numpy-groupies | ||
Ligne 128: | Ligne 157: | ||
* pathtools | * pathtools | ||
* patsy 0.5.1 | * patsy 0.5.1 | ||
+ | * pegasusio | ||
+ | * pegasuspy | ||
* pexpect | * pexpect | ||
* pickleshare | * pickleshare | ||
* Pillow | * Pillow | ||
- | * pip 20.2.2 | + | * pip 21.2.4 |
* pkgconfig | * pkgconfig | ||
* plotly | * plotly | ||
Ligne 141: | Ligne 172: | ||
* prompt-toolkit | * prompt-toolkit | ||
* protobuf | * protobuf | ||
+ | * psrecord | ||
* psutil | * psutil | ||
+ | * psycopg2 | ||
* ptyprocess | * ptyprocess | ||
* py 1.8.1 | * py 1.8.1 | ||
+ | * pyarrow | ||
* pybedtools | * pybedtools | ||
* pyBigWig | * pyBigWig | ||
+ | * pybind11 | ||
* pycodestyle | * pycodestyle | ||
* pycparser | * pycparser | ||
Ligne 151: | Ligne 186: | ||
* pyfaidx | * pyfaidx | ||
* pyfasta | * pyfasta | ||
+ | * pyfastx | ||
* pyflakes | * pyflakes | ||
* Pygments | * Pygments | ||
* pylint | * pylint | ||
+ | * pynndescent | ||
* PyOpenGL | * PyOpenGL | ||
+ | * pypairix | ||
* pyparsing | * pyparsing | ||
* PyQt5 | * PyQt5 | ||
Ligne 164: | Ligne 202: | ||
* pytest | * pytest | ||
* python-dateutil | * python-dateutil | ||
+ | * python-igraph | ||
* python-jsonrpc-server | * python-jsonrpc-server | ||
* python-language-server | * python-language-server | ||
Ligne 181: | Ligne 220: | ||
* quadpy | * quadpy | ||
* ratelimiter | * ratelimiter | ||
+ | * rebound | ||
* regex | * regex | ||
* requests | * requests | ||
Ligne 189: | Ligne 229: | ||
* ruamel.yaml | * ruamel.yaml | ||
* ruamel.yaml.clib | * ruamel.yaml.clib | ||
+ | * scanorama | ||
* scikit-bio | * scikit-bio | ||
* scikit-image | * scikit-image | ||
- | * scikit-learn | + | * scikit-learn |
+ | * scikit-misc | ||
* scipy 1.4.1 | * scipy 1.4.1 | ||
* seaborn | * seaborn | ||
* SecretStorage | * SecretStorage | ||
* Send2Trash | * Send2Trash | ||
+ | * serpentine | ||
* setuptools | * setuptools | ||
* silx 0.12.0 | * silx 0.12.0 | ||
* simplejson | * simplejson | ||
* six | * six | ||
+ | * sklearn | ||
* smmap 3.0.4 | * smmap 3.0.4 | ||
* snakemake | * snakemake | ||
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* sympy 1.6 | * sympy 1.6 | ||
* tabulate | * tabulate | ||
+ | * tbb | ||
* terminado | * terminado | ||
* testpath | * testpath | ||
+ | * texttable | ||
* threadpoolctl | * threadpoolctl | ||
* tifffile | * tifffile | ||
+ | * tinycov | ||
* toml 0.10.1 | * toml 0.10.1 | ||
+ | * toolz | ||
* toposort | * toposort | ||
+ | * torch 1.7.1 | ||
* tornado | * tornado | ||
* tqdm 4.47.0 | * tqdm 4.47.0 | ||
* traitlets | * traitlets | ||
* typed-ast | * typed-ast | ||
+ | * typing-extensions | ||
* tzlocal | * tzlocal | ||
* ujson 1.35 | * ujson 1.35 | ||
+ | * umap-learn | ||
* urllib3 | * urllib3 | ||
* vext 0.7.3 | * vext 0.7.3 | ||
Ligne 238: | Ligne 289: | ||
* wcwidth | * wcwidth | ||
* webencodings | * webencodings | ||
+ | * Werkzeug | ||
* wheel | * wheel | ||
* wrapt | * wrapt | ||
+ | * WTForms | ||
* wurlitzer | * wurlitzer | ||
+ | * xlrd 2.0.1 | ||
* XlsxWriter | * XlsxWriter | ||
* xopen 0.8.4 | * xopen 0.8.4 | ||
* yapf 0.30.0 | * yapf 0.30.0 | ||
+ | * zarr 2.6.1 | ||
* zipfile2 | * zipfile2 | ||
+ | |||
</ | </ | ||
Ligne 262: | Ligne 318: | ||
* beniget | * beniget | ||
* bigfloat | * bigfloat | ||
- | * biopython | + | * biopython |
* bitarray | * bitarray | ||
* bitstring | * bitstring | ||
Ligne 268: | Ligne 324: | ||
* blist 1.3.6 | * blist 1.3.6 | ||
* bx-python | * bx-python | ||
- | * certifi | + | * certifi |
* cffi | * cffi | ||
* chardet | * chardet | ||
Ligne 285: | Ligne 341: | ||
* datrie | * datrie | ||
* deap 1.0.2 | * deap 1.0.2 | ||
- | * decorator | + | * decorator |
* deepdiff | * deepdiff | ||
* DendroPy | * DendroPy | ||
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* humanfriendly | * humanfriendly | ||
* idna 2.6 | * idna 2.6 | ||
+ | * imageio | ||
* importlib | * importlib | ||
* importlib-metadata | * importlib-metadata | ||
Ligne 329: | Ligne 386: | ||
* joblib | * joblib | ||
* jsonpickle | * jsonpickle | ||
- | * jsonschema | + | |
+ | | ||
* jupyter | * jupyter | ||
* jupyter-client | * jupyter-client | ||
Ligne 343: | Ligne 401: | ||
* Markdown | * Markdown | ||
* MarkupSafe | * MarkupSafe | ||
- | * matplotlib | + | * matplotlib |
* Mikado | * Mikado | ||
* mistune | * mistune | ||
Ligne 349: | Ligne 407: | ||
* mpi4py | * mpi4py | ||
* mpmath | * mpmath | ||
+ | * msgpack | ||
* multiprocess | * multiprocess | ||
- | * multiqc | + | * multiqc |
* mysql-connector | * mysql-connector | ||
* nbconvert | * nbconvert | ||
Ligne 358: | Ligne 417: | ||
* netifaces | * netifaces | ||
* netket | * netket | ||
- | * networkx | + | * networkx |
* nose 1.3.7 | * nose 1.3.7 | ||
* notebook | * notebook | ||
Ligne 376: | Ligne 435: | ||
* pexpect | * pexpect | ||
* pickleshare | * pickleshare | ||
- | * Pillow | + | * Pillow |
* pip 20.2.2 | * pip 20.2.2 | ||
* pkgconfig | * pkgconfig | ||
Ligne 395: | Ligne 454: | ||
* pycparser | * pycparser | ||
* pycrypto | * pycrypto | ||
- | * pyDNase | ||
* pyfaidx | * pyfaidx | ||
* pyfasta | * pyfasta | ||
Ligne 404: | Ligne 462: | ||
* pyparsing | * pyparsing | ||
* PyQt5 5.10.1 | * PyQt5 5.10.1 | ||
- | * pysam 0.13 | + | |
+ | | ||
* pytest | * pytest | ||
* python-dateutil | * python-dateutil | ||
Ligne 410: | Ligne 469: | ||
* python-magic | * python-magic | ||
* python-pptx | * python-pptx | ||
+ | * python-rapidjson | ||
* pythran | * pythran | ||
* pytools | * pytools | ||
* pytz | * pytz | ||
* PyVTK 0.5.18 | * PyVTK 0.5.18 | ||
+ | * PyWavelets | ||
* PyYAML | * PyYAML | ||
* pyzmq 17.0.0b3 | * pyzmq 17.0.0b3 | ||
Ligne 427: | Ligne 488: | ||
* rpy2-bioconductor-extensions 0.2.5.dev0 | * rpy2-bioconductor-extensions 0.2.5.dev0 | ||
* ruamel.yaml | * ruamel.yaml | ||
- | * scikit-image | + | * scikit-image |
* scikit-learn | * scikit-learn | ||
* scipy 1.4.1 | * scipy 1.4.1 | ||
Ligne 443: | Ligne 504: | ||
* sortedcontainers | * sortedcontainers | ||
* spectra | * spectra | ||
- | * SQLAlchemy | + | * SQLAlchemy |
* SQLAlchemy-Utils | * SQLAlchemy-Utils | ||
* sympy 1.1.1 | * sympy 1.1.1 | ||
Ligne 450: | Ligne 511: | ||
* terminado | * terminado | ||
* testpath | * testpath | ||
+ | * tifffile | ||
* toml | * toml | ||
* tomlkit | * tomlkit |