Skip to content. | Skip to navigation

Personal tools



This folder holds the following references to publications, sorted by year and author.

There are 15 references in this bibliography folder.

Francesconi, M, Di Stefano, B, Berenguer, C, de Andrés-Aguayo, L, Plana-Carmona, M, Mendez-Lago, M, Guillaumet-Adkins, A, Rodriguez-Esteban, G, Gut, M, Gut, IG, Heyn, H, Lehner, B, and Graf, T (2019).
Single cell RNA-seq identifies the origins of heterogeneity in efficient cell transdifferentiation and reprogramming
eLife, 8:e41627.

Perez, MF, Francesconi, M, Hidalgo-Carcedo, C, and Lehner, B (2017).
Maternal age generates phenotypic variation in Caenorhabditis elegans.
Nature, 552(7683):106-109.

Di Stefano, B, Collombet, S, Jakobsen, JS, Wierer, M, Sardina, JL, Lackner, A, Stadhouders, R, Segura-Morales, C, Francesconi, M, Limone, F, Mann, M, Porse, B, Thieffry, D, and Graf, T (2016).
C/EBPalpha creates elite cells for iPSC reprogramming by upregulating Klf4 and increasing the levels of Lsd1 and Brd4.
Nat Cell Biol, 18(4):371-81.

Li, Y, Lauriola, M, Kim, D, Francesconi, M, D'Uva, G, Shibata, D, Malafa, MP, Yeatman, TJ, Coppola, D, Solmi, R, and Cheng, JQ (2016).
Adenomatous polyposis coli (APC) regulates miR17-92 cluster through beta-catenin pathway in colorectal cancer.
Oncogene, 35(35):4558-4568.

Baumstark, R, Hanzelmann, S, Tsuru, S, Schaerli, Y, Francesconi, M, Mancuso, FM, Castelo, R, and Isalan, M (2015).
The propagation of perturbations in rewired bacterial gene networks.
Nat Commun, 6:10105.

Francesconi, M and Lehner, B (2015).
Reconstructing and analysing cellular states, space and time from gene expression profiles of many cells and single cells.
Mol Biosyst, 11(10):2690-8.

Latorre, I, Chesney, MA, Garrigues, JM, Stempor, P, Appert, A, Francesconi, M, Strome, S, and Ahringer, J (2015).
The DREAM complex promotes gene body H2A.Z for target repression.
Genes Dev, 29(5):495-500.

Francesconi, M and Lehner, B (2014).
The effects of genetic variation on gene expression dynamics during development.
Nature, 505(7482):208-11.

Francesconi, M, Jelier, R, and Lehner, B (2011).
Integrated genome-scale prediction of detrimental mutations in transcription networks.
PLoS Genet, 7(5):e1002077.

Jimenez, RH, Lee, J, Francesconi, M, Castellani, G, Neretti, N, Sanders, JA, Sedivy, J, and Gruppuso, PA (2010).
Regulation of gene expression in hepatic cells by the mammalian Target of Rapamycin (mTOR).
PLoS One, 5(2):e9084.

Remondini, D, Salvioli, S, Francesconi, M, Pierini, M, Mazzatti, DJ, Powell, JR, Zironi, I, Bersani, F, Castellani, G, and Franceschi, C (2010).
Complex patterns of gene expression in human T cells during in vivo aging.
Mol Biosyst, 6(10):1983-92.

Jimenez, RH, Boylan, JM, Lee, J, Francesconi, M, Castellani, G, Sanders, JA, and Gruppuso, PA (2009).
Rapamycin response in tumorigenic and non-tumorigenic hepatic cell lines.
PLoS One, 4(10):e7373.

Scotlandi, K, Remondini, D, Castellani, G, Manara, MC, Nardi, F, Cantiani, L, Francesconi, M, Mercuri, M, Caccuri, AM, Serra, M, Knuutila, S, and Picci, P (2009).
Overcoming resistance to conventional drugs in Ewing sarcoma and identification of molecular predictors of outcome.
J Clin Oncol, 27(13):2209-16.

Francesconi, M, Remondini, D, Neretti, N, Sedivy, JM, Cooper, LN, Verondini, E, Milanesi, L, and Castellani, G (2008).
Reconstructing networks of pathways via significance analysis of their intersections
BMC Bioinformatics, 9(4):S9.

Solmi, R, Lauriola, M, Francesconi, M, Martini, D, Voltattorni, M, Ceccarelli, C, Ugolini, G, Rosati, G, Zanotti, S, Montroni, I, Mattei, G, Taffurelli, M, Santini, D, Pezzetti, F, Ruggeri, A, Castellani, G, Guidotti, L, Coppola, D, and Strippoli, P (2008).
Displayed correlation between gene expression profiles and submicroscopic alterations in response to cetuximab, gefitinib and EGF in human colon cancer cell lines
BMC cancer, 8:227-227.

Document Actions