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This folder holds the following references to publications, sorted by year and author.

There are 30 references in this bibliography folder.

Sun, YH, Zhu, J, Xie, LH, Li, Z, Meduri, R, Zhu, X, Song, C, Chen, C, Ricci, EP, Weng, Z, and Li, XZ (2020).
Ribosomes guide pachytene piRNA formation on long intergenic piRNA precursors.
Nat Cell Biol.

Garcia-Moreno, M, Noerenberg, M, Ni, S, Jarvelin, AI, Gonzalez-Almela, E, Lenz, CE, Bach-Pages, M, Cox, V, Avolio, R, Davis, T, Hester, S, Sohier, TJM, Li, B, Heikel, G, Michlewski, G, Sanz, MA, Carrasco, L, Ricci, EP, Pelechano, V, Davis, I, Fischer, B, Mohammed, S, and Castello, A (2019).
System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection.
Mol Cell, 74(1):196-211.e11.

Hennessy, EJ, van Solingen, C, Scacalossi, KR, Ouimet, M, Afonso, MS, Prins, J, Koelwyn, GJ, Sharma, M, Ramkhelawon, B, Carpenter, S, Busch, A, Chernogubova, E, Matic, LP, Hedin, U, Maegdefessel, L, Caffrey, BE, Hussein, MA, Ricci, EP, Temel, RE, Garabedian, MJ, Berger, JS, Vickers, KC, Kanke, M, Sethupathy, P, Teupser, D, Holdt, LM, and Moore, KJ (2019).
The long noncoding RNA CHROME regulates cholesterol homeostasis in primate.
Nat Metab, 1(1):98-110.

Loss, G, Simoes, PM, Valour, F, Cortes, MF, Gonzaga, L, Bergot, M, Trouillet-Assant, S, Josse, J, Diot, A, Ricci, E, Vasconcelos, AT, and Laurent, F (2019).
Staphylococcus aureus Small Colony Variants (SCVs): News From a Chronic Prosthetic Joint Infection.
Front Cell Infect Microbiol, 9(1):363.

Mangeot, PE, Risson, V, Fusil, F, Marnef, A, Laurent, E, Blin, J, Mournetas, V, Massourides, E, Sohier, TJM, Corbin, A, Aube, F, Teixeira, M, Pinset, C, Schaeffer, L, Legube, G, Cosset, F, Verhoeyen, E, Ohlmann, T, and Ricci, EP (2019).
Genome editing in primary cells and in vivo using viral-derived Nanoblades loaded with Cas9-sgRNA ribonucleoproteins.
Nat Commun, 10(1):45.

Marnef, A, Finoux, A, Arnould, C, Guillou, E, Daburon, V, Rocher, V, Mangeat, T, Mangeot, PE, Ricci, EP, and Legube, G (2019).
A cohesin/HUSH- and LINC-dependent pathway controls ribosomal DNA double-strand break repair.
Genes Dev, 33(17-18):1175-1190.

Rivosecchi, J, Larochelle, M, Teste, C, Grenier, F, Malapert, A, Ricci, EP, Bernard, P, Bachand, F, and Vanoosthuyse, V (2019).
Senataxin homologue Sen1 is required for efficient termination of RNA polymerase III transcription.
EMBO J, 38(16):e101955.

Peres, E, Blin, J, Ricci, EP, Artesi, M, Hahaut, V, Van den Broeke, A, Corbin, A, Gazzolo, L, Ratner, L, Jalinot, P, and Duc Dodon, M (2018).
PDZ domain-binding motif of Tax sustains T-cell proliferation in HTLV-1-infected humanized mice.
PLoS Pathog, 14(3):e1006933.

Bicknell, AA and Ricci, EP (2017).
When mRNA translation meets decay.
Biochem Soc Trans, 45(2):339-351.

Mengardi, C, Limousin, T, Ricci, EP, Soto-Rifo, R, Decimo, D, and Ohlmann, T (2017).
microRNAs stimulate translation initiation mediated by HCV-like IRESes.
Nucleic Acids Res, 45(8):4810-4824.

Atianand, MK, Hu, W, Satpathy, AT, Shen, Y, Ricci, EP, Alvarez-Dominguez, JR, Bhatta, A, Schattgen, SA, McGowan, JD, Blin, J, Braun, JE, Gandhi, P, Moore, MJ, Chang, HY, Lodish, HF, Caffrey, DR, and Fitzgerald, KA (2016).
A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation.
Cell, 165(7):1672-1685.

Blin, J and Ricci, EP (2016).
[An intimate look at the viral replication cycle through ribosome profiling].
Med Sci (Paris), 32(10):849-860.

Sharma, U, Conine, CC, Shea, JM, Boskovic, A, Derr, AG, Bing, XY, Belleannee, C, Kucukural, A, Serra, RW, Sun, F, Song, L, Carone, BR, Ricci, EP, Li, XZ, Fauquier, L, Moore, MJ, Sullivan, R, Mello, CC, Garber, M, and Rando, OJ (2016).
Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.
Science, 351(6271):391-396.

Cenik, C, Cenik, ES, Byeon, GW, Grubert, F, Candille, SI, Spacek, D, Alsallakh, B, Tilgner, H, Araya, CL, Tang, H, Ricci, E, and Snyder, MP (2015).
Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans.
Genome Res, 25(11):1610-21.

Heyer, EE, Ozadam, H, Ricci, EP, Cenik, C, and Moore, MJ (2015).
An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments.
Nucleic Acids Res, 43(1):e2.

Carpenter, S, Ricci, EP, Mercier, BC, Moore, MJ, and Fitzgerald, KA (2014).
Post-transcriptional regulation of gene expression in innate immunity.
Nat Rev Immunol, 14(6):361-76.

Ricci, EP, Kucukural, A, Cenik, C, Mercier, BC, Singh, G, Heyer, EE, Ashar-Patel, A, Peng, L, and Moore, MJ (2014).
Staufen1 senses overall transcript secondary structure to regulate translation.
Nat Struct Mol Biol, 21(1):26-35.

Singh, G, Ricci, EP, and Moore, MJ (2014).
RIPiT-Seq: a high-throughput approach for footprinting RNA:protein complexes.
Methods, 65(3):320-32.

Soto-Rifo, R, Valiente-Echeverria, F, Rubilar, PS, Garcia-de-Gracia, F, Ricci, EP, Limousin, T, Decimo, D, Mouland, AJ, and Ohlmann, T (2014).
HIV-2 genomic RNA accumulates in stress granules in the absence of active translation.
Nucleic Acids Res, 42(20):12861-75.

Carpenter, S, Aiello, D, Atianand, MK, Ricci, EP, Gandhi, P, Hall, LL, Byron, M, Monks, B, Henry-Bezy, M, Lawrence, JB, O'Neill, LAJ, Moore, MJ, Caffrey, DR, and Fitzgerald, KA (2013).
A long noncoding RNA mediates both activation and repression of immune response genes.
Science, 341(6147):789-92.

Ricci, EP, Limousin, T, Soto-Rifo, R, Rubilar, PS, Decimo, D, and Ohlmann, T (2013).
miRNA repression of translation in vitro takes place during 43S ribosomal scanning.
Nucleic Acids Res, 41(1):586-98.

Soto-Rifo, R, Limousin, T, Rubilar, PS, Ricci, EP, Decimo, D, Moncorge, O, Trabaud, M, Andre, P, Cimarelli, A, and Ohlmann, T (2012).
Different effects of the TAR structure on HIV-1 and HIV-2 genomic RNA translation.
Nucleic Acids Res, 40(6):2653-67.

Vera-Otarola, J, Solis, L, Soto-Rifo, R, Ricci, EP, Pino, K, Tischler, ND, Ohlmann, T, Darlix, J, and Lopez-Lastra, M (2012).
The Andes hantavirus NSs protein is expressed from the viral small mRNA by a leaky scanning mechanism.
J Virol, 86(4):2176-87.

Ricci, EP, Limousin, T, Soto-Rifo, R, Allison, R, Poyry, T, Decimo, D, Jackson, RJ, and Ohlmann, T (2011).
Activation of a microRNA response in trans reveals a new role for poly(A) in translational repression.
Nucleic Acids Res, 39(12):5215-31.

Vera-Otarola, J, Soto-Rifo, R, Ricci, EP, Ohlmann, T, Darlix, J, and Lopez-Lastra, M (2010).
The 3' untranslated region of the Andes hantavirus small mRNA functionally replaces the poly(A) tail and stimulates cap-dependent translation initiation from the viral mRNA.
J Virol, 84(19):10420-4.

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