====== Gubbins ======

  * **G**enealogies **U**nbiased **B**y recom**B**inations **I**n **N**ucleotide **S**equences, phylogenetic analysis of large samples of recombinant bacterial whole genome sequences. 

^  Version  ^  Compilateur  ^  Interconnexion  ^  chemin d'accès  ^  OS  ^
|  2.2.0  |  gcc 6.3.0  |  N/A  |  /usr/bin  |  Debian 9  |
| | **modulefile** : N/A  ||||


Pour utiliser les modules, consulter [[documentation:tools:modules|Environment Modules]]



===== Site officiel =====

  * https://github.com/sanger-pathogens/gubbins/
  * http://sanger-pathogens.github.io/gubbins/

Gubbins is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions.