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documentation:examples:modules [2013/02/19 16:07] – [Usage] ltaulell | documentation:examples:modules [2018/01/05 13:25] – [Usage] ltaulell |
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====== Environment Modules ====== | ====== Environment Modules ====== |
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<note important>Disponible uniquement sur Centos6.2 et Debian7</note> | <note warning>FIXME update needed</note> |
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===== Usage ===== | ===== Usage ===== |
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* Charger l'environnement du PSMN (commande utilisable dans un script) | * Charger l'environnement du PSMN |
<code> | <code> |
module use /usr/local/Modules | module use /applis/PSMN/Modules |
</code> | </code> |
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===== Modules disponibles (février 2013) ===== | ===== Modules disponibles (Novembre 2014) ===== |
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<code> | <code> |
~$ module avail | ~$ module avail |
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---------------------------- /usr/local/Modules/ ----------------------------- | ---------------------------- /applis/PSMN/Modules ----------------------------- |
ADF/2010.02 PhyML/20120412 | ADF/2010.02 FastTree/2.1.7 Primer3/2.3.4 |
AllPathsLG/r42874-cen5-amd PhyML/3.0 | ADF/2012.01 GMAP/2014-10-22 R/2.15.1 |
AllPathsLG/r42874-cen6-intel Phylobayes/3.3b-deb7 | ADF/2013.01 Gaussian/g03-lasim R/3.0.2 |
AllPathsLG/r42874-deb7-amd Phylobayes/3.3e-deb7 | ADF/2013.01.intelmpi Gaussian/g09-chimie RSeQC/2.3.1 |
Bowtie/0.12.7 Primer3/2.3.4 | ADF/2013.01.platformmpi Gaussian/g09-geol RSeQC/2.3.3 |
Bowtie/2.0.2 RSeQC/2.3 | Abinit/7.2.1-gnu-4.7.2-x86_64 Gaussian/g09c01-chimie SAMtools/1.1 |
CP2K/2.2.426-deb7 Spinevolution/3.4.4 | Abinit/7.6.4 Gaussian/g09c01-geol Spinevolution/3.4.4 |
Celera/WGS-7.0 Trinity/r2011-11-26-cen5 | AllPathsLG/r42874-gnu-4.7.1 Gaussian/g09c01-icbms Spinevolution/3.4.5 |
HTSeq/0.5.3p3 Trinity/r2012-06-08-cen5 | Amber/12-intel-14.0.1-openmp Gaussian/g09d01-chimie Trinity/r2012-06-08 |
HTSeq/0.5.3p9 Trinity/r2012-06-08-cen6 | Amber/12-intel-14.0.1-openmpi-1.6.4 Gaussian/g09d01-geol Trinity/r20140413 |
MrBayes/3.2.1-deb7-intel-mpi Trinity/r2012-06-08-deb7 | Amber/12-intel-14.0.1-openmpi-1.6.4-K20-DPDP Gaussian/g09d01-icbms Trinity/r20140717 |
MrBayes/3.2.1-deb7-intel-seq modules.psmn | Amber/12-intel-14.0.1-openmpi-1.6.4-K20-SPFP Gaussian/g09d01-lasim VASP/4.6.36-gnu-4.7.2 |
| Amber/12-intel-14.0.1-openmpi-1.6.4-M2070-DPDP HTSeq/0.5.3p3 VASP/5.3.2-intel-11.1-debian7 |
| Amber/12-intel-14.0.1-openmpi-1.6.4-M2070-SPFP HTSeq/0.5.3p9 VASP/5.3.3-gnu-4.7.2 |
| Amber/12-intel-14.0.1-seq HTSlib/1.1 VASP/5.3.3-intel-14.0.1-debian7 |
| Amber/12-intel-14.0.1-seq-K20-DPDP Lammps/11Nov13-mpi-1.6.4-intel-14.0.1 VASP/5.3.5-intel-14.0.1-debian7 |
| Amber/12-intel-14.0.1-seq-K20-SPFP Lammps/28Jun14-mpi-1.6.4-intel-14.0.1 VESTA/3.1.7 |
| Amber/12-intel-14.0.1-seq-M2070-DPDP MAFFT/7.187 VMD/1.9.1 |
| Amber/12-intel-14.0.1-seq-M2070-SPFP MIRA/4.0.2 Velvet/1.2.10 |
| BCFtools/1.1 Matlab/R2011b aTRAM/1.01 |
| BLAT/35 Molden/5.0.6 fftw/3.3.3-intel-14.0.1 |
| Base/debian7 Molpro/2010.1-intel-14.0.1 fftw/3.3.3-intel-14.0.1-mpi-1.6.4 |
| Base/psmn Molpro/2010.1-intel-14.0.1-openmp fftw/3.3.3-intel-14.0.1-openmp |
| Base/sge MrBayes/3.2.1-intel-mpi intel/11.1.069 |
| Base/test MrBayes/3.2.1-intel-seq intel/12.0.084 |
| Bowtie/0.12.7 Oases/0.2.8 intel/14.0.1 |
| Bowtie/2.0.2 OpenAlea/svn-r4239 modules.psmn |
| CP2K/2.2.426 ParaView/3.12.0 openmpi/1.4.1-intel-11.1.069 |
| CP2K/2.5.1 ParaView/4.0.1 openmpi/1.4.5-gnu-4.7.2 |
| CP2K/2.5.1-complete PhyML/20120412 openmpi/1.5.4-gnu-4.7.2 |
| CP2K/2.5.1-minimal PhyML/20140223 openmpi/1.5.4-intel-12.0.084 |
| Cassandra/2.5.4 PhyML/3.0 openmpi/1.6.4-gnu-4.7.2 |
| Celera/WGS-7.0 Phylobayes/3.3b openmpi/1.6.4-intel-12.0.084 |
| Corset/1.03 Phylobayes/3.3e openmpi/1.6.4-intel-14.0.1 |
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</code> | </code> |