Publications

This folder holds the following references to publications, sorted by year and author.

There are 43 references in this bibliography folder.

Sharma, U, Conine, CC, Shea, JM, Boskovic, A, Derr, AG, Bing, XY, Belleannee, C, Kucukural, A, Serra, RW, Sun, F, Song, L, Carone, BR, Ricci, EP, Li, XZ, Fauquier, L, Moore, MJ, Sullivan, R, Mello, CC, Garber, M, and Rando, OJ (2016).
Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.
Science, 351(6271):391-396.

Cenik, C, Cenik, ES, Byeon, GW, Grubert, F, Candille, SI, Spacek, D, Alsallakh, B, Tilgner, H, Araya, CL, Tang, H, Ricci, E, and Snyder, MP (2015).
Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans.
Genome Res, 25(11):1610-21.

Heyer, EE, Ozadam, H, Ricci, EP, Cenik, C, and Moore, MJ (2015).
An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments.
Nucleic Acids Res, 43(1):e2.

Carpenter, S, Ricci, EP, Mercier, BC, Moore, MJ, and Fitzgerald, KA (2014).
Post-transcriptional regulation of gene expression in innate immunity.
Nat Rev Immunol, 14(6):361-76.

Ricci, EP, Kucukural, A, Cenik, C, Mercier, BC, Singh, G, Heyer, EE, Ashar-Patel, A, Peng, L, and Moore, MJ (2014).
Staufen1 senses overall transcript secondary structure to regulate translation.
Nat Struct Mol Biol, 21(1):26-35.

Singh, G, Ricci, EP, and Moore, MJ (2014).
RIPiT-Seq: a high-throughput approach for footprinting RNA:protein complexes.
Methods, 65(3):320-32.

Soto-Rifo, R, Valiente-Echeverria, F, Rubilar, PS, Garcia-de-Gracia, F, Ricci, EP, Limousin, T, Decimo, D, Mouland, AJ, and Ohlmann, T (2014).
HIV-2 genomic RNA accumulates in stress granules in the absence of active translation.
Nucleic Acids Res, 42(20):12861-75.

Carpenter, S, Aiello, D, Atianand, MK, Ricci, EP, Gandhi, P, Hall, LL, Byron, M, Monks, B, Henry-Bezy, M, Lawrence, JB, O'Neill, LAJ, Moore, MJ, Caffrey, DR, and Fitzgerald, KA (2013).
A long noncoding RNA mediates both activation and repression of immune response genes.
Science, 341(6147):789-92.

Ricci, EP, Limousin, T, Soto-Rifo, R, Rubilar, PS, Decimo, D, and Ohlmann, T (2013).
miRNA repression of translation in vitro takes place during 43S ribosomal scanning.
Nucleic Acids Res, 41(1):586-98.

Soto-Rifo, R, Limousin, T, Rubilar, PS, Ricci, EP, Decimo, D, Moncorge, O, Trabaud, M, Andre, P, Cimarelli, A, and Ohlmann, T (2012).
Different effects of the TAR structure on HIV-1 and HIV-2 genomic RNA translation.
Nucleic Acids Res, 40(6):2653-67.

Vera-Otarola, J, Solis, L, Soto-Rifo, R, Ricci, EP, Pino, K, Tischler, ND, Ohlmann, T, Darlix, J, and Lopez-Lastra, M (2012).
The Andes hantavirus NSs protein is expressed from the viral small mRNA by a leaky scanning mechanism.
J Virol, 86(4):2176-87.

Ricci, EP, Limousin, T, Soto-Rifo, R, Allison, R, Poyry, T, Decimo, D, Jackson, RJ, and Ohlmann, T (2011).
Activation of a microRNA response in trans reveals a new role for poly(A) in translational repression.
Nucleic Acids Res, 39(12):5215-31.

Vera-Otarola, J, Soto-Rifo, R, Ricci, EP, Ohlmann, T, Darlix, J, and Lopez-Lastra, M (2010).
The 3' untranslated region of the Andes hantavirus small mRNA functionally replaces the poly(A) tail and stimulates cap-dependent translation initiation from the viral mRNA.
J Virol, 84(19):10420-4.

Balvay, L, Soto Rifo, R, Ricci, EP, Decimo, D, and Ohlmann, T (2009).
Structural and functional diversity of viral IRESes.
Biochim Biophys Acta, 1789(9-10):542-57.

Ricci, EP, Mure, F, Gruffat, H, Decimo, D, Medina-Palazon, C, Ohlmann, T, and Manet, E (2009).
Translation of intronless RNAs is strongly stimulated by the Epstein-Barr virus mRNA export factor EB2.
Nucleic Acids Res, 37(15):4932-43.

Ricci, EP, Herbreteau, CH, Decimo, D, Schaupp, A, Datta, SAK, Rein, A, Darlix, J, and Ohlmann, T (2008).
In vitro expression of the HIV-2 genomic RNA is controlled by three distinct internal ribosome entry segments that are regulated by the HIV protease and the Gag polyprotein.
RNA, 14(7):1443-55.

Ricci, EP, Soto Rifo, R, Herbreteau, CH, Decimo, D, and Ohlmann, T (2008).
Lentiviral RNAs can use different mechanisms for translation initiation.
Biochem Soc Trans, 36(Pt 4):690-3.

Soto Rifo, R, Ricci, EP, Decimo, D, Moncorge, O, and Ohlmann, T (2007).
Back to basics: the untreated rabbit reticulocyte lysate as a competitive system to recapitulate cap/poly(A) synergy and the selective advantage of IRES-driven translation.
Nucleic Acids Res, 35(18):e121.