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This folder holds the following references to publications, sorted by year and author.

There are 36 references in this bibliography folder.

Arnould, C, Rocher, V, Finoux, A, Clouaire, T, Li, K, Zhou, F, Caron, P, Mangeot, PE, Ricci, EP, Mourad, R, Haber, JE, Noordermeer, D, and Legube, G (2021).
Loop extrusion as a mechanism for formation of DNA damage repair foci.
Nature, 590(7847):660-665.

Eshraghi, M, Karunadharma, PP, Blin, J, Shahani, N, Ricci, EP, Michel, A, Urban, NT, Galli, N, Sharma, M, Ramírez-Jarquín, UN, Florescu, K, Hernandez, J, and Subramaniam, S (2021).
Mutant Huntingtin stalls ribosomes and represses protein synthesis in a cellular model of Huntington disease.
Nat Commun, 12(1):1461.

Gutierrez-Guerrero, A, Abrey Recalde, MJ, Mangeot, PE, Costa, C, Bernadin, O, Périan, S, Fusil, F, Froment, G, Martinez-Turtos, A, Krug, A, Martin, F, Benabdellah, K, Ricci, EP, Giovannozzi, S, Gijsbers, R, Ayuso, E, Cosset, F, and Verhoeyen, E (2021).
Baboon Envelope Pseudotyped "Nanoblades" Carrying Cas9/gRNA Complexes Allow Efficient Genome Editing in Human T, B, and CD34(+) Cells and Knock-in of AAV6-Encoded Donor DNA in CD34(+) Cells.
Front Genome Ed, 3:604371.

Mangeot, PE, Guiguettaz, L, Sohier, TJM, and Ricci, EP (2021).
Delivery of the Cas9/sgRNA Ribonucleoprotein Complex in Immortalized and Primary Cells via Virus-like Particles ("Nanoblades").
J Vis Exp(169).

Morris, C, Cluet, D, and Ricci, EP (2021).
Ribosome dynamics and mRNA turnover, a complex relationship under constant cellular scrutiny.
Wiley Interdiscip Rev RNA, 12(6):e1658.

Sun, YH, Wang, RH, Du, K, Zhu, J, Zheng, J, Xie, LH, Pereira, AA, Zhang, C, Ricci, EP, and Li, XZ (2021).
Coupled protein synthesis and ribosome-guided piRNA processing on mRNAs.
Nat Commun, 12(1):5970.

Agarwal, S, Vierbuchen, T, Ghosh, S, Chan, J, Jiang, Z, Kandasamy, RK, Ricci, E, and Fitzgerald, KA (2020).
The long non-coding RNA LUCAT1 is a negative feedback regulator of interferon responses in humans.
Nat Commun, 11(1):6348.

Sun, YH, Zhu, J, Xie, LH, Li, Z, Meduri, R, Zhu, X, Song, C, Chen, C, Ricci, EP, Weng, Z, and Li, XZ (2020).
Ribosomes guide pachytene piRNA formation on long intergenic piRNA precursors.
Nat Cell Biol.

Vasquez-Rifo, A, Ricci, EP, and Ambros, V (2020).
Pseudomonas aeruginosa cleaves the decoding center of Caenorhabditis elegans ribosomes.
PLoS Biol, 18(12):e3000969.

Garcia-Moreno, M, Noerenberg, M, Ni, S, Jarvelin, AI, Gonzalez-Almela, E, Lenz, CE, Bach-Pages, M, Cox, V, Avolio, R, Davis, T, Hester, S, Sohier, TJM, Li, B, Heikel, G, Michlewski, G, Sanz, MA, Carrasco, L, Ricci, EP, Pelechano, V, Davis, I, Fischer, B, Mohammed, S, and Castello, A (2019).
System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection.
Mol Cell, 74(1):196-211.e11.

Hennessy, EJ, van Solingen, C, Scacalossi, KR, Ouimet, M, Afonso, MS, Prins, J, Koelwyn, GJ, Sharma, M, Ramkhelawon, B, Carpenter, S, Busch, A, Chernogubova, E, Matic, LP, Hedin, U, Maegdefessel, L, Caffrey, BE, Hussein, MA, Ricci, EP, Temel, RE, Garabedian, MJ, Berger, JS, Vickers, KC, Kanke, M, Sethupathy, P, Teupser, D, Holdt, LM, and Moore, KJ (2019).
The long noncoding RNA CHROME regulates cholesterol homeostasis in primate.
Nat Metab, 1(1):98-110.

Loss, G, Simoes, PM, Valour, F, Cortes, MF, Gonzaga, L, Bergot, M, Trouillet-Assant, S, Josse, J, Diot, A, Ricci, E, Vasconcelos, AT, and Laurent, F (2019).
Staphylococcus aureus Small Colony Variants (SCVs): News From a Chronic Prosthetic Joint Infection.
Front Cell Infect Microbiol, 9(1):363.

Mangeot, PE, Risson, V, Fusil, F, Marnef, A, Laurent, E, Blin, J, Mournetas, V, Massourides, E, Sohier, TJM, Corbin, A, Aube, F, Teixeira, M, Pinset, C, Schaeffer, L, Legube, G, Cosset, F, Verhoeyen, E, Ohlmann, T, and Ricci, EP (2019).
Genome editing in primary cells and in vivo using viral-derived Nanoblades loaded with Cas9-sgRNA ribonucleoproteins.
Nat Commun, 10(1):45.

Marnef, A, Finoux, A, Arnould, C, Guillou, E, Daburon, V, Rocher, V, Mangeat, T, Mangeot, PE, Ricci, EP, and Legube, G (2019).
A cohesin/HUSH- and LINC-dependent pathway controls ribosomal DNA double-strand break repair.
Genes Dev, 33(17-18):1175-1190.

Bicknell, AA and Ricci, EP (2017).
When mRNA translation meets decay.
Biochem Soc Trans, 45(2):339-351.

Mengardi, C, Limousin, T, Ricci, EP, Soto-Rifo, R, Decimo, D, and Ohlmann, T (2017).
microRNAs stimulate translation initiation mediated by HCV-like IRESes.
Nucleic Acids Res, 45(8):4810-4824.

Atianand, MK, Hu, W, Satpathy, AT, Shen, Y, Ricci, EP, Alvarez-Dominguez, JR, Bhatta, A, Schattgen, SA, McGowan, JD, Blin, J, Braun, JE, Gandhi, P, Moore, MJ, Chang, HY, Lodish, HF, Caffrey, DR, and Fitzgerald, KA (2016).
A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation.
Cell, 165(7):1672-1685.

Blin, J and Ricci, EP (2016).
[An intimate look at the viral replication cycle through ribosome profiling].
Med Sci (Paris), 32(10):849-860.

Sharma, U, Conine, CC, Shea, JM, Boskovic, A, Derr, AG, Bing, XY, Belleannee, C, Kucukural, A, Serra, RW, Sun, F, Song, L, Carone, BR, Ricci, EP, Li, XZ, Fauquier, L, Moore, MJ, Sullivan, R, Mello, CC, Garber, M, and Rando, OJ (2016).
Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.
Science, 351(6271):391-396.

Cenik, C, Cenik, ES, Byeon, GW, Grubert, F, Candille, SI, Spacek, D, Alsallakh, B, Tilgner, H, Araya, CL, Tang, H, Ricci, E, and Snyder, MP (2015).
Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans.
Genome Res, 25(11):1610-21.

Heyer, EE, Ozadam, H, Ricci, EP, Cenik, C, and Moore, MJ (2015).
An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments.
Nucleic Acids Res, 43(1):e2.

Carpenter, S, Ricci, EP, Mercier, BC, Moore, MJ, and Fitzgerald, KA (2014).
Post-transcriptional regulation of gene expression in innate immunity.
Nat Rev Immunol, 14(6):361-76.

Ricci, EP, Kucukural, A, Cenik, C, Mercier, BC, Singh, G, Heyer, EE, Ashar-Patel, A, Peng, L, and Moore, MJ (2014).
Staufen1 senses overall transcript secondary structure to regulate translation.
Nat Struct Mol Biol, 21(1):26-35.

Singh, G, Ricci, EP, and Moore, MJ (2014).
RIPiT-Seq: a high-throughput approach for footprinting RNA:protein complexes.
Methods, 65(3):320-32.

Soto-Rifo, R, Valiente-Echeverria, F, Rubilar, PS, Garcia-de-Gracia, F, Ricci, EP, Limousin, T, Decimo, D, Mouland, AJ, and Ohlmann, T (2014).
HIV-2 genomic RNA accumulates in stress granules in the absence of active translation.
Nucleic Acids Res, 42(20):12861-75.

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