Publications (not up to date)

This folder holds the following references to publications, sorted by year and author.

There are 107 references in this bibliography folder.

Gely-Pernot, A, Raverdeau, M, Teletin, M, Vernet, N, Feret, B, Klopfenstein, M, Dennefeld, C, Davidson, I, Benoit, G, Mark, M, and Ghyselinck, NB (2015).
Retinoic Acid Receptors Control Spermatogonia Cell-Fate and Induce Expression of the SALL4A Transcription Factor.
PLoS Genet, 11(10):e1005501.

Corre, G, Stockholm, D, Arnaud, O, Kaneko, G, Vinuelas, J, Yamagata, Y, Neildez-Nguyen, TMA, Kupiec, J, Beslon, G, Gandrillon, O, and Paldi, A (2014).
Stochastic fluctuations and distributed control of gene expression impact cellular memory.
PLoS One, 9(12):e115574.

Nguyen-Lefebvre, AT, Leprun, G, Morin, V, Vinuelas, J, Coute, Y, Madjar, J, Gandrillon, O, and Gonin-Giraud, S (2014).
V-erbA generates ribosomes devoid of RPL11 and regulates translational activity in avian erythroid progenitors.
Oncogene, 33(12):1581-9.

Chatonnet, F, Guyot, R, Benoit, G, and Flamant, F (2013).
Genome-wide analysis of thyroid hormone receptors shared and specific functions in neural cells.
Proc Natl Acad Sci U S A, 110(8):E766-75.

Joly-Tonetti, N, Vinuelas, J, Gandrillon, O, and Lamartine, J (2013).
Differential miRNA expression profiles in proliferating or differentiated keratinocytes in response to gamma irradiation.
BMC Genomics, 14:184.

Vinuelas, J, Kaneko, G, Coulon, A, Vallin, E, Morin, V, Mejia-Pous, C, Kupiec, J, Beslon, G, and Gandrillon, O (2013).
Quantifying the contribution of chromatin dynamics to stochastic gene expression reveals long, locus-dependent periods between transcriptional bursts.
BMC Biol, 11:15.

Fischer, S, Kurbatova, P, Bessonov, N, Gandrillon, O, Volpert, V, and Crauste, F (2012).
Modeling erythroblastic islands: using a hybrid model to assess the function of central macrophage.
J Theor Biol, 298:92-106.

Gandrillon, O, Kolesnik-Antoine, D, Kupiec, J, and Beslon, G (2012).
Chance at the heart of the cell.
Prog Biophys Mol Biol, 110(1):1-4.

Moutier, E, Ye, T, Choukrallah, M, Urban, S, Osz, J, Chatagnon, A, Delacroix, L, Langer, D, Rochel, N, Moras, D, Benoit, G, and Davidson, I (2012).
Retinoic acid receptors recognize the mouse genome through binding elements with diverse spacing and topology.
J Biol Chem, 287(31):26328-41.

Raverdeau, M, Gely-Pernot, A, Feret, B, Dennefeld, C, Benoit, G, Davidson, I, Chambon, P, Mark, M, and Ghyselinck, NB (2012).
Retinoic acid induces Sertoli cell paracrine signals for spermatogonia differentiation but cell autonomously drives spermatocyte meiosis.
Proc Natl Acad Sci U S A, 109(41):16582-7.

Terry, E, Marvel, J, Arpin, C, Gandrillon, O, and Crauste, F (2012).
Mathematical model of the primary CD8 T cell immune response: stability analysis of a nonlinear age-structured system.
J Math Biol, 65(2):263-91.

Vinuelas, J, Kaneko, G, Coulon, A, Beslon, G, and Gandrillon, O (2012).
Towards experimental manipulation of stochasticity in gene expression.
Prog Biophys Mol Biol, 110(1):44-53.

Lalevee, S, Anno, YN, Chatagnon, A, Samarut, E, Poch, O, Laudet, V, Benoit, G, Lecompte, O, and Rochette-Egly, C (2011).
Genome-wide in silico identification of new conserved and functional retinoic acid receptor response elements (direct repeats separated by 5 bp).
J Biol Chem, 286(38):33322-34.

Mejia-Pous, C, Damiola, F, and Gandrillon, O (2011).
Cholesterol synthesis-related enzyme oxidosqualene cyclase is required to maintain self-renewal in primary erythroid progenitors.
Cell Prolif, 44(5):441-52.

Nguyen-Lefebvre, AT, Gonin-Giraud, S, Scherl, A, Arboit, P, Granger, L, Sanchez, J, Diaz, J, Gandrillon, O, and Madjar, J (2011).
Identification of human, rat and chicken ribosomal proteins by a combination of two-dimensional polyacrylamide gel electrophoresis and mass spectrometry.
J Proteomics, 74(2):167-85.

Royer, C, Briolay, J, Garel, A, Brouilly, P, Sasanuma, S, Sasanuma, M, Shimomura, M, Keime, C, Gandrillon, O, Huang, Y, Chavancy, G, Mita, K, and Couble, P (2011).
Novel genes differentially expressed between posterior and median silk gland identified by SAGE-aided transcriptome analysis.
Insect Biochem Mol Biol, 41(2):118-24.

Coulon, A, Gandrillon, O, and Beslon, G (2010).
On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter.
BMC Syst Biol, 4:2.

Crauste, F, Demin, I, Gandrillon, O, and Volpert, V (2010).
Mathematical study of feedback control roles and relevance in stress erythropoiesis.
J Theor Biol, 263(3):303-16.

Demin, I, Crauste, F, Gandrillon, O, and Volpert, V (2010).
A multi-scale model of erythropoiesis.
J Biol Dyn, 4(1):59-70.

Mejia-Pous, C, Vinuelas, J, Faure, C, Koszela, J, Kawakami, K, Takahashi, Y, and Gandrillon, O (2009).
A combination of transposable elements and magnetic cell sorting provides a very efficient transgenesis system for chicken primary erythroid progenitors.
BMC Biotechnol, 9:81.

Mitasiunaite, I, Rigotti, C, Schicklin, S, Meyniel, L, Boulicaut, J, and Gandrillon, O (2009).
Extracting signature motifs from promoter sets of differentially expressed genes.
In Silico Biol, 9(1-2):S17-39.

Osborne, PW, Benoit, G, Laudet, V, Schubert, M, and Ferrier, DEK (2009).
Differential regulation of ParaHox genes by retinoic acid in the invertebrate chordate amphioxus (Branchiostoma floridae).
Dev Biol, 327(1):252-62.

Rambaud, J, Triqueneaux, G, Masse, I, Staels, B, Laudet, V, and Benoit, G (2009).
Rev-erbalpha2 mRNA encodes a stable protein with a potential role in circadian clock regulation.
Mol Endocrinol, 23(5):630-9.

Sassi-Messai, S, Gibert, Y, Bernard, L, Nishio, S, Ferri Lagneau, KF, Molina, J, Andersson-Lendahl, M, Benoit, G, Balaguer, P, and Laudet, V (2009).
The phytoestrogen genistein affects zebrafish development through two different pathways.
PLoS One, 4(3):e4935.

Bresson-Mazet, C, Gandrillon, O, and Gonin-Giraud, S (2008).
Stem cell antigen 2: a new gene involved in the self-renewal of erythroid progenitors.
Cell Prolif, 41(5):726-38.