Gubbins

• Genealogies Unbiased By recomBinations In Nucleotide Sequences, phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.

Pour utiliser les modules, consulter Environment Modules

• https://github.com/sanger-pathogens/gubbins/
• http://sanger-pathogens.github.io/gubbins/

Gubbins is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions.