HTSlib

  • a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools.
Version Compilateur Interconnexion chemin d'accès OS
1.6 GCC/7.2.0 OpenMPI/3.0.0 N/A ${APPLIS}/MPI/GCC/7.2.0/OpenMPI/3.0.0/HTSlib/1.6/bin Debian 9
modulefile : GCC/7.2.0/OpenMPI/3.0.0/HTSlib/1.6
1.6 GCC/6.4.0 OpenMPI/3.0.0 N/A ${APPLIS}/MPI/GCC/6.4.0/OpenMPI/3.0.0/HTSlib/1.6/bin Debian 9
modulefile : GCC/6.4.0/OpenMPI/3.0.0/HTSlib/1.6
1.6 GCC/5.4.0 N/A ${APPLIS}/Compiler/GCC/5.4.0/HTSlib/1.6/bin Debian 9
modulefile : GCC/5.4.0/HTSlib/1.6
1.1 GCC/6.4.0 OpenMPI/3.0.0 N/A ${APPLIS}/MPI/GCC/6.4.0/OpenMPI/3.0.0/HTSlib/1.1/bin Debian 9
modulefile : GCC/6.4.0/OpenMPI/3.0.0/HTSlib/1.1
APPLIS=/applis/PSMN/debian9/software

Pour utiliser les modules, consulter Environment Modules

Doc Admin-sys PSMN

make prefix=/applis/PSMN/debian7/HTSlib/1.1 install

Site officiel

documentation/tools/software/htslib.txt · Dernière modification: 2020/08/25 17:58 (modification externe)