Ceci est une ancienne révision du document !
Modules python
Python 3.8.3
python3.8 -m pip list | awk '{print " * "$0}'
- alabaster 0.7.12
- appdirs 1.4.4
- astroid 2.4.1
- atomicwrites 1.4.0
- attrs 19.3.0
- autopep8 1.5.3
- Babel 2.8.0
- backcall 0.1.0
- beniget 0.2.1
- bigfloat 0.4.0
- biopython 1.77
- black 19.10b0
- bleach 3.1.5
- CacheControl 0.12.6
- certifi 2020.4.5.1
- cffi 1.14.0
- chardet 3.0.4
- click 7.1.2
- cloudpickle 1.4.1
- ClusterShell 1.8.3
- coloredlogs 14.0
- colormath 3.0.0
- ConfigArgParse 1.2.3
- cryptography 2.9.2
- cutadapt 2.10
- cycler 0.10.0
- Cython 0.29.19
- datrie 0.8.2
- decorator 4.4.2
- defusedxml 0.6.0
- DendroPy 4.4.0
- diff-match-patch 20181111
- dill 0.3.1.1
- dnaio 0.4.2
- docutils 0.16
- drmaa 0.7.9
- entrypoints 0.3
- ete3 3.1.1
- execo 2.6.4
- fabio 0.10.2
- flake8 3.8.2
- freetype-py 2.1.0.post1
- frozendict 1.2
- future 0.18.2
- gast 0.3.3
- gitdb 4.0.5
- GitPython 3.1.2
- gnureadline 8.0.0
- gprof2dot 2019.11.30
- graphviz 0.14
- h5py 2.10.0
- hdf5plugin 2.3.0
- hdf5storage 0.1.15
- hdmedians 0.13
- helpdev 0.7.1
- HTSeq 0.12.4
- humanfriendly 8.2
- idna 2.9
- imageio 2.8.0
- imagesize 1.2.0
- intervaltree 3.0.2
- invoke 1.4.1
- ipykernel 5.3.0
- ipython 7.14.0
- ipython-genutils 0.2.0
- isort 4.3.21
- jedi 0.15.2
- jeepney 0.4.3
- Jinja2 2.11.2
- joblib 0.15.1
- json5 0.9.5
- jsonschema 3.2.0
- jupyter-client 6.1.3
- jupyter-console 6.1.0
- jupyter-core 4.6.3
- jupyterlab 2.1.4
- jupyterlab-server 1.1.5
- keyring 21.2.1
- kiwisolver 1.2.0
- lazy-object-proxy 1.4.3
- llvmlite 0.32.1
- lockfile 0.12.2
- loguru 0.5.0
- lxml 4.5.1
- lzstring 1.0.4
- Mako 1.1.2
- Markdown 3.2.2
- MarkupSafe 1.1.1
- matplotlib 3.2.1
- mccabe 0.6.1
- Mikado 1.2.4
- mistune 0.8.4
- more-itertools 8.3.0
- mpmath 1.1.0
- msgpack 1.0.0
- multiprocess 0.70.9
- multiqc 1.8
- mysql-connector 2.2.9
- natsort 7.0.1
- nbconvert 5.6.1
- nbformat 5.0.6
- networkx 2.4
- nose 1.3.7
- notebook 6.0.3
- numba 0.49.1
- numpy 1.18.4
- numpydoc 1.0.0
- opencv-contrib-python 4.2.0.34
- packaging 20.4
- pandas 1.0.3
- pandocfilters 1.4.2
- parso 0.5.2
- pathos 0.2.5
- pathspec 0.8.0
- pathtools 0.1.2
- patsy 0.5.1
- pexpect 4.8.0
- pickleshare 0.7.5
- Pillow 7.1.2
- pip 20.1.1
- pkgconfig 1.5.1
- plotly 4.7.1
- pluggy 0.13.1
- ply 3.11
- pox 0.2.7
- ppft 1.6.6.1
- prometheus-client 0.8.0
- prompt-toolkit 3.0.5
- protobuf 3.12.1
- psutil 5.7.0
- ptyprocess 0.6.0
- py 1.8.1
- pybedtools 0.8.1
- pyBigWig 0.3.17
- pycodestyle 2.6.0
- pycparser 2.20
- pydocstyle 5.0.2
- pyfaidx 0.5.8
- pyfasta 0.5.2
- pyflakes 2.2.0
- Pygments 2.6.1
- pylint 2.5.2
- PyOpenGL 3.1.5
- pyparsing 2.4.7
- PyQt5 5.12.3
- PyQt5-sip 12.7.2
- pyqtgraph 0.10.0
- PyQtWebEngine 5.12.1
- pyrsistent 0.16.0
- pysam 0.15.4
- pytest 5.4.2
- python-dateutil 2.8.1
- python-jsonrpc-server 0.3.4
- python-language-server 0.31.10
- python-magic 0.4.18
- python-pptx 0.6.18
- pythran 0.9.5
- pytz 2020.1
- PyVTK 0.5.18
- PyWavelets 1.1.1
- pyxdg 0.26
- PyYAML 5.3.1
- pyzmq 19.0.1
- QDarkStyle 2.8.1
- QtAwesome 0.7.2
- qtconsole 4.7.4
- QtPy 1.9.0
- ratelimiter 1.2.0.post0
- regex 2020.5.14
- requests 2.23.0
- restructuredtext-lint 1.3.0
- retrying 1.3.3
- rope 0.17.0
- rpy2 3.3.3
- ruamel.yaml 0.16.10
- ruamel.yaml.clib 0.2.0
- scikit-bio 0.5.6
- scikit-image 0.17.2
- scikit-learn 0.23.1
- scipy 1.4.1
- seaborn 0.10.1
- SecretStorage 3.1.2
- Send2Trash 1.5.0
- setuptools 46.4.0
- silx 0.12.0
- simplejson 3.17.0
- six 1.15.0
- smmap 3.0.4
- snakemake 5.18.1
- snowballstemmer 2.0.0
- sortedcontainers 2.1.0
- spectra 0.0.11
- Sphinx 3.0.4
- sphinxcontrib-applehelp 1.0.2
- sphinxcontrib-devhelp 1.0.2
- sphinxcontrib-htmlhelp 1.0.3
- sphinxcontrib-jsmath 1.0.1
- sphinxcontrib-qthelp 1.0.3
- sphinxcontrib-serializinghtml 1.1.4
- spyder 4.1.3
- spyder-kernels 1.9.1
- SQLAlchemy 1.3.17
- SQLAlchemy-Utils 0.36.6
- statsmodels 0.11.1
- tabulate 0.8.7
- terminado 0.8.3
- testpath 0.4.4
- threadpoolctl 2.0.0
- tifffile 2020.5.30
- toml 0.10.1
- toposort 1.5
- tornado 6.0.4
- traitlets 4.3.3
- typed-ast 1.4.1
- tzlocal 2.1
- ujson 1.35
- urllib3 1.25.9
- vext 0.7.3
- vext.wx 0.7.0
- vispy 0.6.4
- watchdog 0.10.2
- wcwidth 0.1.9
- webencodings 0.5.1
- wheel 0.34.2
- wrapt 1.12.1
- wurlitzer 2.0.0
- XlsxWriter 1.2.8
- xopen 0.8.4
- yapf 0.30.0
- zipfile2 0.0.12
Python 3.6.1
python3.6 -m pip list | awk '{print " * "$0}'
- alabaster 0.7.12
- altgraph 0.16.1
- appdirs 1.4.3
- args 0.1.0
- asn1crypto 0.24.0
- attrs 17.4.0
- auxlib 0.0.42
- backcall 0.1.0
- bam2x 0.2.6
- beniget 0.2.1
- bigfloat 0.4.0
- biopython 1.70
- bitarray 0.8.1
- bitstring 3.1.5
- bleach 2.1.2
- blist 1.3.6
- bx-python 0.8.1
- certifi 2017.11.5
- cffi 1.11.2
- chardet 3.0.4
- click 6.7
- clint 0.5.1
- coloredlogs 14.0
- colorlog 3.1.2
- colormath 3.0.0
- conda 4.3.16
- ConfigArgParse 0.14.0
- cryptography 2.1.4
- cutadapt 1.15
- cycler 0.10.0
- Cython 3.0a5
- datrie 0.7.1
- deap 1.0.2
- decorator 4.1.2
- deepdiff 3.3.0
- DendroPy 4.3.0
- dill 0.2.8.2
- distribute 0.7.3
- docopt 0.6.2
- docutils 0.16
- drmaa 0.7.9
- ecdsa 0.13
- entrypoints 0.2.3
- enum34 1.1.6
- ete3 3.1.1
- execo 2.6.3
- fabio 0.6.0
- fastnumbers 3.0.0
- frozendict 1.2
- funcsigs 1.0.2
- future 0.16.0
- gast 0.3.3
- gitdb2 2.0.5
- GitPython 2.1.11
- gnureadline 6.3.8
- gprof2dot 2017.9.19
- hdf5plugin 2.0.0b0
- hdf5storage 0.1.15
- hmmlearn 0.2.0
- html5lib 1.0.1
- HTSeq 0.11.2
- humanfriendly 8.2
- idna 2.6
- importlib 1.0.4
- intervaltree 2.1.0
- intervaltree-bio 1.0.1
- invoke 0.22.0
- ipykernel 4.7.0
- ipython 6.2.1
- ipython-genutils 0.2.0
- ipywidgets 7.1.0
- jedi 0.11.1
- Jinja2 2.10
- joblib 0.11
- jsonpickle 1.0
- jsonschema 2.6.0
- jupyter 1.0.0
- jupyter-client 5.2.1
- jupyter-console 6.1.0
- jupyter-core 4.4.0
- kiwisolver 1.1.0
- liac-arff 2.1.0
- llvmlite 0.32.1
- lxml 4.2.5
- lzstring 1.0.3
- macholib 1.11
- Mako 1.0.7
- Markdown 2.6.11
- MarkupSafe 1.0
- matplotlib 3.2.1
- Mikado 2.0rc2
- mistune 0.8.3
- mock 2.0.0
- mpi4py 2.0.0
- mpmath 1.0.0
- multiprocess 0.70.6.1
- multiqc 1.8
- mysql-connector 2.1.4
- nbconvert 5.3.1
- nbformat 4.4.0
- netaddr 0.7.19
- netifaces 0.10.5
- networkx 1.11
- nose 1.3.7
- notebook 5.3.0rc1
- numba 0.49.1
- numexpr 2.7.0
- numpy 1.19.0rc1
- numpy-groupies 0+unknown
- pandas 0.22.0
- pandocfilters 1.4.2
- paramiko 2.1.2
- parso 0.1.1
- pathos 0.2.2.1
- paycheck 1.0.2
- pbr 2.0.0
- pefile 2018.8.8
- pexpect 4.3.1
- pickleshare 0.7.4
- Pillow 5.0.0
- pip 20.2b1
- pkgconfig 1.5.1
- plotly 4.7.1
- pluggy 0.6.0
- ply 3.11
- pox 0.2.4
- ppft 1.6.4.8
- prompt-toolkit 2.0.9
- protobuf 3.5.1
- ptyprocess 0.5.2
- pudb 2017.1.4
- py 1.5.2
- pyasn1 0.4.2
- pybedtools 0.7.10
- pyBigWig 0.3.17
- pycosat 0.6.3
- pycparser 2.18
- pycrypto 2.6.1
- pyDNase 0.3.0
- pyfaidx 0.5.5.2
- pyfasta 0.5.2
- Pygments 2.2.0
- PyInstaller 3.4
- pyopencl 2018.1.1
- PyOpenGL 3.1.1a1
- pyparsing 2.2.0
- PyQt5 5.10.1
- pysam 0.13
- pytest 3.4.1
- python-dateutil 2.6.0
- python-lzo 1.11
- python-magic 0.4.15
- python-pptx 0.6.16
- pythran 0.9.5
- pytools 2018.1
- pytz 2017.2
- PyVTK 0.5.18
- PyYAML 4.2b4
- pyzmq 17.0.0b3
- qtconsole 4.3.1
- QtPy 1.4.0
- quast 4.6.3
- ratelimiter 1.2.0.post0
- requests 2.23.0
- restructuredtext-lint 1.3.0
- retrying 1.3.3
- rpy2 3.0.1
- rpy2-bioconductor-extensions 0.2.5.dev0
- ruamel.yaml 0.15.35
- scikit-image 0.13.1
- scikit-learn 0.19.1
- scipy 1.4.1
- seaborn 0.9.0
- Send2Trash 1.4.2
- seqlearn 0.2
- setuptools 28.8.0
- silx 0.7.0
- simplegeneric 0.8.1
- simplejson 3.13.2
- sip 4.19.8
- six 1.11.0
- smmap2 2.0.5
- snakemake 5.4.1
- sortedcontainers 1.5.9
- spectra 0.0.11
- SQLAlchemy 1.3.0b3
- SQLAlchemy-Utils 0.33.11
- sympy 1.1.1
- tables 3.6.0
- tabulate 0.8.3
- terminado 0.8.1
- testpath 0.3.1
- toml 0.10.1
- tomlkit 0.6.0
- tornado 5.0a1
- tqdm 4.46.0
- traitlets 4.3.2
- twobitreader 3.1.6
- ujson 1.35
- urllib3 1.22
- urwid 1.3.1
- vext 0.7.0
- vext.pyqt4 0.5.20
- vext.wx 0.6.8
- virtualenv 15.1.0
- vispy 0.5.2
- ViTables 3.0.0
- wcwidth 0.1.7
- webencodings 0.5.1
- wheel 0.33.0
- widgetsnbextension 3.1.0
- wrapt 1.11.1
- XlsxWriter 1.1.2
- xopen 0.3.2
- zipfile2 0.0.12
Python 2.7.13
pip list --format=legacy | awk '{print " * "$0}'
- altgraph (0.16.1)
- appdirs (1.4.3)
- args (0.1.0)
- ase (3.15.0)
- asn1crypto (0.23.0)
- attrs (17.4.0)
- backports.functools-lru-cache (1.4)
- backports.shutil-get-terminal-size (1.0.0)
- bam2x (0.2.6)
- bigfloat (0.4.0)
- biopython (1.70)
- bitarray (0.8.1)
- bitstring (3.1.5)
- blist (1.3.6)
- bx-python (0.8.1)
- bz2file (0.98)
- certifi (2017.11.5)
- cffi (1.11.2)
- chardet (3.0.4)
- click (6.7)
- clint (0.5.1)
- clipper (0.2.0)
- colormath (3.0.0)
- conda (4.3.16)
- configparser (3.5.0)
- cryptography (2.1.3)
- cutadapt (1.16)
- cycler (0.10.0)
- Cython (0.27.3)
- deap (1.0.2)
- decorator (4.1.2)
- dis3 (0.1.3)
- distribute (0.7.3)
- docopt (0.6.2)
- ecdsa (0.13)
- enum34 (1.1.6)
- ete2 (2.3.10)
- ete3 (3.1.1)
- Flask (0.12.2)
- funcsigs (1.0.2)
- future (0.16.0)
- gprof2dot (2017.9.19)
- GPy (1.9.2)
- h5py (2.7.1)
- hmmlearn (0.2.0)
- HTSeq (0.9.1)
- idna (2.6)
- intervaltree (2.1.0)
- intervaltree-bio (1.0.1)
- ipaddress (1.0.18)
- ipython (5.5.0)
- ipython-genutils (0.2.0)
- itsdangerous (0.24)
- Jinja2 (2.10)
- joblib (0.11)
- liac-arff (2.1.0)
- libtiff (0.4.2)
- lxml (4.1.1)
- lzstring (1.0.3)
- macholib (1.11)
- MACS2 (2.1.1.20160309)
- Mako (1.0.7)
- Markdown (2.6.9)
- MarkupSafe (1.0)
- matplotlib (1.5.3)
- mock (2.0.0)
- mpi4py (2.0.0)
- mpmath (1.0.0)
- multiqc (1.4)
- netaddr (0.7.19)
- netifaces (0.10.5)
- networkx (2.0)
- nose (1.3.7)
- numpy (1.14.0)
- pandas (0.22.0)
- paramiko (2.1.2)
- paramz (0.9.1)
- pathlib2 (2.3.0)
- paycheck (1.0.2)
- pbr (2.0.0)
- pdb-clone (1.10)
- pefile (2018.8.8)
- pexpect (4.3.1)
- pickleshare (0.7.4)
- Pillow (5.0.0)
- pip (9.0.3)
- pluggy (0.6.0)
- ProfileNJ (20161018)
- prompt-toolkit (1.0.15)
- ptyprocess (0.5.2)
- pudb (2017.1.4)
- py (1.5.2)
- pyasn1 (0.3.7)
- pybedtools (0.7.10)
- pycosat (0.6.3)
- pycparser (2.18)
- pycrypto (2.6.1)
- pyDNase (0.2.6)
- pyfasta (0.5.2)
- Pygments (2.2.0)
- PyInstaller (3.4)
- pyopencl (2018.1.1)
- PyOpenGL (3.1.1a1)
- pyparsing (2.2.0)
- pysam (0.13)
- pytest (3.4.1)
- python-dateutil (2.6.1)
- python-lzo (1.11)
- pytools (2018.1)
- pytz (2017.3)
- PyVTK (0.5.18)
- PyWavelets (0.5.2)
- PyYAML (3.12)
- QtPy (1.3.1)
- quast (4.6.3)
- requests (2.18.4)
- RiboCode (1.2.7)
- RSeQC (2.6.4)
- ruamel.ordereddict (0.4.13)
- ruamel.yaml (0.15.35)
- scandir (1.6)
- scikit-image (0.13.1)
- scikit-learn (0.19.1)
- scipy (1.0.0)
- seqlearn (0.2)
- setuptools (39.0.1)
- silx (0.7.0)
- simplegeneric (0.8.1)
- simplejson (3.12.0)
- six (1.11.0)
- sklearn (0.0)
- sortedcontainers (1.5.7)
- spectra (0.0.11)
- subprocess32 (3.5.0rc1)
- traitlets (4.3.2)
- twobitreader (3.1.6)
- urllib3 (1.22)
- urwid (1.3.1)
- vext (0.7.0)
- vext.pyqt4 (0.5.20)
- vext.pyqt5 (0.5.21)
- vext.wx (0.6.8)
- virtualenv (15.1.0)
- wcwidth (0.1.7)
- Werkzeug (0.14.1)
- xopen (0.3.2)
- zipfile2 (0.0.12)