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Modules python
Python 3.8.3
python3.8 -m pip list | awk '{print " * "$0}'
adjustText 0.7.3
alabaster 0.7.12
anndata 0.7.5
annoy 1.17.0
appdirs 1.4.4
asciitree 0.3.3
astroid 2.4.1
atomicwrites 1.4.0
attrs 19.3.0
autopep8 1.5.3
Babel 2.8.0
backcall 0.1.0
beniget 0.2.1
bigfloat 0.4.0
biopython 1.77
black 19.10b0
bleach 3.1.5
CacheControl 0.12.6
certifi 2020.6.20
cffi 1.14.0
chardet 3.0.4
click 7.1.2
cloudpickle 1.4.1
ClusterShell 1.8.3
cmake 3.17.3
coloredlogs 14.0
colormath 3.0.0
ConfigArgParse 1.2.3
cryptography 2.9.2
cutadapt 2.10
cycler 0.10.0
Cython 0.29.19
datrie 0.8.2
decorator 4.4.2
defusedxml 0.6.0
demuxEM 0.1.5.post1
DendroPy 4.4.0
diff-match-patch 20181111
dill 0.3.1.1
dnaio 0.4.2
docopt 0.6.2
docutils 0.16
drmaa 0.7.9
entrypoints 0.3
ete3 3.1.1
execo 2.6.4
fabio 0.10.2
fasteners 0.16
fbpca 1.0
fitsne 1.1.1
flake8 3.8.2
forceatlas2-python 1.1
freetype-py 2.1.0.post1
frozendict 1.2
future 0.18.2
gast 0.3.3
geosketch 1.2
gitdb 4.0.5
GitPython 3.1.2
gnureadline 8.0.0
gprof2dot 2019.11.30
gprofiler-official 1.0.0
graphviz 0.14
h5py 2.10.0
harmony-pytorch 0.1.5
hdf5plugin 2.3.0
hdf5storage 0.1.15
hdmedians 0.13
helpdev 0.7.1
hnswlib 0.5.0
HTSeq 0.12.4
humanfriendly 8.2
idna 2.9
imagecodecs 2020.5.30
imageio 2.8.0
imagesize 1.2.0
intel-openmp 2021.1.2
intervaltree 2.1.0
invoke 1.4.1
ipykernel 5.3.0
ipython 7.14.0
ipython-genutils 0.2.0
isort 4.3.21
jedi 0.15.2
jeepney 0.4.3
Jinja2 2.11.2
JIT 0.0.1
joblib 0.15.1
json5 0.9.5
jsonschema 3.2.0
jupyter-client 6.1.3
jupyter-console 6.1.0
jupyter-core 4.6.3
jupyterlab 2.1.4
jupyterlab-server 1.1.5
keyring 21.2.1
kiwisolver 1.2.0
lazy-object-proxy 1.4.3
leidenalg 0.8.3
lightgbm 3.1.1
llvmlite 0.35.0
lockfile 0.12.2
loguru 0.5.0
loompy 3.0.6
louvain 0.7.0
lxml 4.5.1
lzstring 1.0.4
Mako 1.1.2
Markdown 3.2.2
MarkupSafe 1.1.1
matplotlib 3.3.1
mccabe 0.6.1
Mikado 1.2.4
mistune 0.8.4
mkl 2021.1.1
more-itertools 8.3.0
mpi4py 3.0.3
mpmath 1.1.0
msgpack 1.0.0
multiprocess 0.70.9
multiqc 1.9
mysql-connector 2.2.9
natsort 7.0.1
nbconvert 5.6.1
nbformat 5.0.6
ndim 0.1.4
networkx 2.4
nose 1.3.7
notebook 6.0.3
numba 0.52.0
numcodecs 0.7.3
numpy 1.18.4
numpy-groupies 0+unknown
numpydoc 1.0.0
opencv-contrib-python 4.2.0.34
orthopy 0.8.4
packaging 20.4
pandas 1.0.3
pandocfilters 1.4.2
parso 0.5.2
pathos 0.2.5
pathspec 0.8.0
pathtools 0.1.2
patsy 0.5.1
pegasusio 0.2.9
pegasuspy 1.2.0
pexpect 4.8.0
pickleshare 0.7.5
Pillow 7.1.2
pip 21.0
pkgconfig 1.5.1
plotly 4.7.1
pluggy 0.13.1
ply 3.11
pox 0.2.7
ppft 1.6.6.1
prometheus-client 0.8.0
prompt-toolkit 3.0.5
protobuf 3.12.1
psrecord 1.2
psutil 5.7.0
ptyprocess 0.6.0
py 1.8.1
pyarrow 3.0.0
pybedtools 0.8.1
pyBigWig 0.3.17
pybind11 2.6.2
pycodestyle 2.6.0
pycparser 2.20
pydocstyle 5.0.2
pyfaidx 0.5.8
pyfasta 0.5.2
pyflakes 2.2.0
Pygments 2.6.1
pylint 2.5.2
pynndescent 0.5.1
PyOpenGL 3.1.5
pyparsing 2.4.7
PyQt5 5.12.3
PyQt5-sip 12.7.2
pyqtgraph 0.10.0
PyQtWebEngine 5.12.1
pyrsistent 0.16.0
pysam 0.15.4
pytest 5.4.2
python-dateutil 2.8.1
python-igraph 0.8.3
python-jsonrpc-server 0.3.4
python-language-server 0.31.10
python-magic 0.4.18
python-pptx 0.6.18
pythran 0.9.5
pytz 2020.1
PyVTK 0.5.18
PyWavelets 1.1.1
pyxdg 0.26
PyYAML 5.3.1
pyzmq 19.0.1
QDarkStyle 2.8.1
QtAwesome 0.7.2
qtconsole 4.7.4
QtPy 1.9.0
quadpy 0.16.2
ratelimiter 1.2.0.post0
regex 2020.5.14
requests 2.23.0
restructuredtext-lint 1.3.0
retrying 1.3.3
rope 0.17.0
rpy2 3.3.3
ruamel.yaml 0.16.10
ruamel.yaml.clib 0.2.0
scanorama 1.7
scikit-bio 0.5.6
scikit-image 0.17.2
scikit-learn 0.24.1
scikit-misc 0.1.3
scipy 1.4.1
seaborn 0.10.1
SecretStorage 3.1.2
Send2Trash 1.5.0
setuptools 46.4.0
silx 0.12.0
simplejson 3.17.0
six 1.15.0
smmap 3.0.4
snakemake 5.18.1
snowballstemmer 2.0.0
sortedcontainers 2.1.0
spectra 0.0.11
Sphinx 3.0.4
sphinxcontrib-applehelp 1.0.2
sphinxcontrib-devhelp 1.0.2
sphinxcontrib-htmlhelp 1.0.3
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 1.0.3
sphinxcontrib-serializinghtml 1.1.4
spyder 4.1.3
spyder-kernels 1.9.1
SQLAlchemy 1.3.17
SQLAlchemy-Utils 0.36.6
statsmodels 0.11.1
sympy 1.6
tabulate 0.8.7
tbb 2021.1.1
terminado 0.8.3
testpath 0.4.4
texttable 1.6.3
threadpoolctl 2.0.0
tifffile 2020.5.30
toml 0.10.1
toolz 0.11.1
toposort 1.5
torch 1.7.1
tornado 6.0.4
tqdm 4.47.0
traitlets 4.3.3
typed-ast 1.4.1
typing-extensions 3.7.4.3
tzlocal 2.1
ujson 1.35
umap-learn 0.5.0
urllib3 1.25.9
vext 0.7.3
vext.wx 0.7.0
vispy 0.6.4
watchdog 0.10.2
wcwidth 0.1.9
webencodings 0.5.1
wheel 0.34.2
wrapt 1.12.1
wurlitzer 2.0.0
xlrd 2.0.1
XlsxWriter 1.2.8
xopen 0.8.4
yapf 0.30.0
zarr 2.6.1
zipfile2 0.0.12
Python 3.6.1
python3.6 -m pip list | awk '{print " * "$0}'
Python 2.7.13
pip list --format=legacy | awk '{print " * "$0}'
altgraph (0.16.1)
appdirs (1.4.3)
args (0.1.0)
ase (3.15.0)
asn1crypto (0.23.0)
attrs (17.4.0)
backports.functools-lru-cache (1.4)
backports.shutil-get-terminal-size (1.0.0)
bam2x (0.2.6)
bigfloat (0.4.0)
biopython (1.70)
bitarray (0.8.1)
bitstring (3.1.5)
blist (1.3.6)
bx-python (0.8.1)
bz2file (0.98)
certifi (2017.11.5)
cffi (1.11.2)
chardet (3.0.4)
click (6.7)
clint (0.5.1)
clipper (0.2.0)
colormath (3.0.0)
conda (4.3.16)
configparser (3.5.0)
cryptography (2.1.3)
cutadapt (1.16)
cycler (0.10.0)
Cython (0.27.3)
deap (1.0.2)
decorator (4.1.2)
dis3 (0.1.3)
distribute (0.7.3)
docopt (0.6.2)
ecdsa (0.13)
enum34 (1.1.6)
ete2 (2.3.10)
ete3 (3.1.1)
Flask (0.12.2)
funcsigs (1.0.2)
future (0.16.0)
gprof2dot (2017.9.19)
GPy (1.9.2)
h5py (2.7.1)
hmmlearn (0.2.0)
HTSeq (0.9.1)
idna (2.6)
intervaltree (2.1.0)
intervaltree-bio (1.0.1)
ipaddress (1.0.18)
ipython (5.5.0)
ipython-genutils (0.2.0)
itsdangerous (0.24)
Jinja2 (2.10)
joblib (0.11)
liac-arff (2.1.0)
libtiff (0.4.2)
lxml (4.1.1)
lzstring (1.0.3)
macholib (1.11)
MACS2 (2.1.1.20160309)
Mako (1.0.7)
Markdown (2.6.9)
MarkupSafe (1.0)
matplotlib (1.5.3)
mock (2.0.0)
mpi4py (2.0.0)
mpmath (1.0.0)
multiqc (1.4)
netaddr (0.7.19)
netifaces (0.10.5)
networkx (2.0)
nose (1.3.7)
numpy (1.14.0)
pandas (0.22.0)
paramiko (2.1.2)
paramz (0.9.1)
pathlib2 (2.3.0)
paycheck (1.0.2)
pbr (2.0.0)
pdb-clone (1.10)
pefile (2018.8.8)
pexpect (4.3.1)
pickleshare (0.7.4)
Pillow (5.0.0)
pip (9.0.3)
pluggy (0.6.0)
ProfileNJ (20161018)
prompt-toolkit (1.0.15)
ptyprocess (0.5.2)
pudb (2017.1.4)
py (1.5.2)
pyasn1 (0.3.7)
pybedtools (0.7.10)
pycosat (0.6.3)
pycparser (2.18)
pycrypto (2.6.1)
pyDNase (0.2.6)
pyfasta (0.5.2)
Pygments (2.2.0)
PyInstaller (3.4)
pyopencl (2018.1.1)
PyOpenGL (3.1.1a1)
pyparsing (2.2.0)
pysam (0.13)
pytest (3.4.1)
python-dateutil (2.6.1)
python-lzo (1.11)
pytools (2018.1)
pytz (2017.3)
PyVTK (0.5.18)
PyWavelets (0.5.2)
PyYAML (3.12)
QtPy (1.3.1)
quast (4.6.3)
requests (2.18.4)
RiboCode (1.2.7)
RSeQC (2.6.4)
ruamel.ordereddict (0.4.13)
ruamel.yaml (0.15.35)
scandir (1.6)
scikit-image (0.13.1)
scikit-learn (0.19.1)
scipy (1.0.0)
seqlearn (0.2)
setuptools (39.0.1)
silx (0.7.0)
simplegeneric (0.8.1)
simplejson (3.12.0)
six (1.11.0)
sklearn (0.0)
sortedcontainers (1.5.7)
spectra (0.0.11)
subprocess32 (3.5.0rc1)
traitlets (4.3.2)
twobitreader (3.1.6)
urllib3 (1.22)
urwid (1.3.1)
vext (0.7.0)
vext.pyqt4 (0.5.20)
vext.pyqt5 (0.5.21)
vext.wx (0.6.8)
virtualenv (15.1.0)
wcwidth (0.1.7)
Werkzeug (0.14.1)
xopen (0.3.2)
zipfile2 (0.0.12)