Directory
Publications
This folder holds the following references to publications, sorted by year and author.
There are 64 references in this bibliography folder.
Jost, D and Vaillant, C
(2018).
Epigenomics in 3D: importance of long-range spreading and specific interactions in epigenomic maintenance.
Nucleic Acids Res, 46(5):2252-2264.
Jost, D, Rosa, A, Vaillant, C, and Everaers, R
(2018).
A polymer physics view on universal and sequence-specific aspects of chromosome folding
Elsevier, vol. Nuclear Architecture and Dynamics.
Richard, M, Chuffart, F, Duplus-Bottin, H, Pouyet, F, Spichty, M, Fulcrand, E, Entrevan, M, Barthelaix, A, Springer, M, Jost, D, and Yvert, G
(2018).
Assigning function to natural allelic variation via dynamic modeling of gene network induction.
Mol Syst Biol, 14(1):e7803.
Szabo, Q, Jost, D, Chang, J, Cattoni, DI, Papadopoulos, GL, Bonev, B, Sexton, T, Gurgo, J, Jacquier, C, Nollmann, M, Bantignies, F, and Cavalli, G
(2018).
TADs are 3D structural units of higher-order chromosome organization in Drosophila.
Sci Adv, 4(2):eaar8082.
Haddad, N, Jost, D, and Vaillant, C
(2017).
Perspectives: Using polymer modeling to understand the formation and function of nuclear compartments
Chromosome Research, 25:35-50.
Haddad, N, Vaillant, C, and Jost, D
(2017).
IC-Finder: inferring robustly the hierarchical organization of chromatin folding.
Nucleic Acids Res, 45(10):e81.
Jost, D, Vaillant, C, and Meister, P
(2017).
Coupling 1D modifications and 3D nuclear organization: data, models and function.
Curr Opin Cell Biol, 44:20-27.
Chuffart, F, Richard, M, Jost, D, Burny, C, Duplus-Bottin, H, Ohya, Y, and Yvert, G
(2016).
Exploiting Single-Cell Quantitative Data to Map Genetic Variants Having Probabilistic Effects.
PLoS Genet, 12(8):e1006213.
Olarte-Plata, JD, Haddad, N, Vaillant, C, and Jost, D
(2016).
The folding landscape of the epigenome.
Phys Biol, 13(2):026001.
Zerihun, MB, Vaillant, C, and Jost, D
(2015).
Effect of replication on epigenetic memory and consequences on gene transcription.
Phys Biol, 12(2):026007.
Jost, D
(2014).
Bifurcation in epigenetics: implications in development, proliferation, and diseases.
Phys Rev E Stat Nonlin Soft Matter Phys, 89(1):010701.
Jost, D, Carrivain, P, Cavalli, G, and Vaillant, C
(2014).
Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains.
Nucleic Acids Res, 42(15):9553-61.
Sharma, R, Jost, D, Kind, J, Gomez-Saldivar, G, van Steensel, B, Askjaer, P, Vaillant, C, and Meister, P
(2014).
Differential spatial and structural organization of the X chromosome underlies dosage compensation in C. elegans.
Genes Dev, 28(23):2591-6.
Jost, D
(2013).
Twist-DNA: computing base-pair and bubble opening probabilities in genomic superhelical DNA.
Bioinformatics, 29(19):2479-81.
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