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Braker
- Unsupervised RNA-Seq-based genome annotation
| Version | Compilateur | Interconnexion | chemin d'accès | OS |
|---|---|---|---|---|
| 2.0.3 | N/A | N/A | ${APPLIS}/Local/BRAKER/2.0.3/bin | Generic |
| modulefile : BRAKER/2.0.3 | ||||
| 1.9 | N/A | N/A | /applis/PSMN/generic/Braker/1.9/bin | Generic |
| modulefile : BRAKER/1.9 | ||||
APPLIS=/applis/PSMN/debian9/software
Pour utiliser les modules, consulter Environment Modules
Usage on PSMN
Braker needs additionals PERL modules installable from CPAN (see Perl5 for CPAN installation/configuration ):
cpan > install File::Spec::Functions > install Hash::Merge > install List::Util > install Logger::Simple > install Module::Load::Conditional > install Sub::Uplevel > install Parallel::ForkManager > install Scalar::Util::Numeric #> install YAML (core module) #> install POSIX (core module)
See also Augustus for additional configuration of –AUGUSTUS_CONFIG_PATH variable.